PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4903_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 298aa    MW: 33212.2 Da    PI: 6.1036
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4903_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.65.2e-28164224259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                 dD ++WrKYGqKe+ gs+fpr+YYrCt++   +Cp+kk+v+r +edp ++ +tY+g+H+++
  RrC4903_p2 164 DDNHTWRKYGQKEILGSKFPRAYYRCTHQklyNCPAKKQVQRLNEDPFTFRVTYRGSHTCH 224
                 8****************************999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.8E-27160224IPR003657WRKY domain
SuperFamilySSF1182903.53E-25162225IPR003657WRKY domain
SMARTSM007741.3E-36163225IPR003657WRKY domain
PfamPF031061.7E-25164224IPR003657WRKY domain
PROSITE profilePS5081120.243164226IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEEVMSMIFQ GLKLVKELES SLPEKSLEAL STSLDEITKT FGDANERLKI VLEIRNSDTA  60
LDQLKPVVVS CSDQLLMQNE AGLMQEYWLR CGGSTSSQGI GAVTQIRQIM AVEDGGRNLT  120
AAERSGGSGS NPSTPRQRRR KNEGEEHVVL VAALRTGNIN LPPDDNHTWR KYGQKEILGS  180
KFPRAYYRCT HQKLYNCPAK KQVQRLNEDP FTFRVTYRGS HTCHIYSTAP TASATAPTAP  240
VTTSLSLDYG PLFFDMADAM MFDSSRIGAN MDIFSFSDLS HHDDHCYRRS EDGDDGDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-20164223968OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482000.10.0PREDICTED: WRKY transcription factor 55-like
SwissprotQ9SHB51e-142WRK55_ARATH; WRKY transcription factor 55
TrEMBLA0A3P6CZE20.0A0A3P6CZE2_BRAOL; Uncharacterized protein
STRINGBo4g190380.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36412757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.11e-122WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    An extracellular subtilase switch for immune priming in Arabidopsis.
    PLoS Pathog., 2013. 9(6): p. e1003445
    [PMID:23818851]
  2. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis.
    PLoS Pathog., 2016. 12(11): p. e1006003
    [PMID:27806116]