PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4874_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 217aa    MW: 23897.6 Da    PI: 5.6572
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4874_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-183484155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f ++e+Aa+a++ a+++++g
  RrC4874_p2 34 PVYRGVRKRS-WGKWVSEIREPRK---KSRIWLGTFPSPEMAARAHDVAALSIKG 84
                68*****888.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.6E-133484IPR001471AP2/ERF domain
SMARTSM003802.4E-353598IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-213593IPR016177DNA-binding domain
PROSITE profilePS5103223.5383592IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-313593IPR001471AP2/ERF domain
CDDcd000181.48E-333694No hitNo description
PRINTSPR003674.9E-103647IPR001471AP2/ERF domain
PRINTSPR003674.9E-105874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MIGLESTSKN SATNTVSQES KRETKPVRDS GKHPVYRGVR KRSWGKWVSE IREPRKKSRI  60
WLGTFPSPEM AARAHDVAAL SIKGTSATLN FPDLVDSFPR PSSLSPRDIQ AAALKAAHME  120
IITTTSQSSP SSSLASSFSL ESLVSSSGTG SEELEEIVEL PSLGSNYDGT TQLSNEFIFF  180
DSTDFWVHPP HQLSEVDYEM IPGSLSQDWD LPGLFKY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1832921172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00529DAPTransfer from AT5G25810Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728830.0AC172883.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH125N23, complete sequence.
GenBankAC1893210.0AC189321.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036J07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018454728.11e-154PREDICTED: ethylene-responsive transcription factor TINY-like
RefseqXP_018456156.11e-154PREDICTED: ethylene-responsive transcription factor TINY-like
SwissprotQ391273e-97TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBLA0A078JMH41e-127A0A078JMH4_BRANA; BnaC09g50850D protein
STRINGBo9g011210.11e-125(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.13e-92ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]