PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC481_p4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | WRKY | ||||||||
Protein Properties | Length: 286aa MW: 31597.2 Da PI: 7.5362 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.6 | 3.3e-30 | 161 | 219 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 ++Dgy+WrKYGqK+ ++++ pr+Y+rC++a +Cpvkkkv+rsaedp+v++ tYeg+Hnh RrC481_p4 161 VKDGYQWRKYGQKVTRDNPSPRAYFRCSFApSCPVKKKVQRSAEDPSVLVATYEGTHNH 219 58***************************99**************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.0E-28 | 153 | 220 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.53E-25 | 157 | 220 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.7E-34 | 161 | 221 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-24 | 162 | 219 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.993 | 163 | 222 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MDCSSLLDLN TNPFDRSFPA KLPKEEIKVS TSADFETKQS ASELREELNR VSSENKKLTE 60 MLETVCEHYY ALQRHLEKLQ GRKSPEMDQI EQPTKKRKQA PDELLGFGNG LSGGKNENSS 120 SIEDHHHQLL SCKRPVTDSF SKANVSTVYV PSNSSDTSLT VKDGYQWRKY GQKVTRDNPS 180 PRAYFRCSFA PSCPVKKKVQ RSAEDPSVLV ATYEGTHNHL GPNGSEGDVT SQVGSSTLTL 240 DLVNSGQGTM QEVLVQQMAS SLTKDSKFTA ALAAAISGRL MEQSRT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-20 | 161 | 224 | 14 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Positively modulates defense-related gene expression and disease resistance. {ECO:0000269|PubMed:12068113}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and pathogens. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:12068113}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM593157 | 0.0 | KM593157.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY84) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018482929.1 | 0.0 | PREDICTED: WRKY transcription factor 18-like | ||||
Swissprot | Q9C5T4 | 1e-151 | WRK18_ARATH; WRKY transcription factor 18 | ||||
TrEMBL | A0A0A7RI94 | 0.0 | A0A0A7RI94_BRAOC; WRKY84 protein | ||||
STRING | Bra023983.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6584 | 19 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31800.1 | 1e-153 | WRKY DNA-binding protein 18 |