PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC4660_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 217aa MW: 24489.2 Da PI: 9.7777 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.1 | 3.5e-06 | 5 | 27 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F++ +L+ Hir H RrC4660_p1 5 HVCKFCNKKFPSGKSLEGHIRIH 27 79*******************99 PP | |||||||
2 | zf-C2H2 | 13.9 | 0.00016 | 152 | 174 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k+F++ +L H r+H RrC4660_p1 152 HECPICFKVFKSDQTLGGHKRSH 174 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.57E-7 | 2 | 31 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.6E-7 | 2 | 30 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.759 | 5 | 32 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.9E-5 | 5 | 23 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0012 | 5 | 27 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 7 | 27 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 6.7E-8 | 151 | 174 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.39 | 152 | 174 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.18 | 152 | 174 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 154 | 174 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MEKKHVCKFC NKKFPSGKSL EGHIRIHTNE YSVASVSFNA KNPTKNKKRL VVVDQREITP 60 LKQQQLCCRG CGGSNHMDCH CVGEKMVMDT RSDDLGVKEG GSKYELRKSK RVMPCYESDS 120 CVDTNNKIHR SSDSKSPMVK KASGANKSSK VHECPICFKV FKSDQTLGGH KRSHFIGNHG 180 HMIKNKAAAD MPIDLNLPSF LLRQQYLVYD YITYITS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493480 | 2e-31 | AB493480.1 Arabidopsis thaliana At1g26610 mRNA for hypothetical protein, partial cds, clone: RAAt1g26610. | |||
GenBank | CP002684 | 2e-31 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | T1K7 | 2e-31 | AC013427.3 Sequence of BAC T1K7 from Arabidopsis thaliana chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018437508.1 | 2e-57 | PREDICTED: zinc finger protein ZAT1-like | ||||
TrEMBL | A0A3P6B2Q5 | 2e-44 | A0A3P6B2Q5_BRACM; Uncharacterized protein | ||||
STRING | Bo5g042740.1 | 9e-42 | (Brassica oleracea) | ||||
STRING | XP_006415935.1 | 3e-41 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1900 | 21 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26590.1 | 3e-33 | C2H2-like zinc finger protein |