PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC4529_p4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 366aa MW: 41471.2 Da PI: 4.3274 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22 | 3.9e-07 | 313 | 356 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwq 45 +W+t E + ++ +++G + Wk+I + + +Rt ++k++++ RrC4529_p4 313 PWSTAETLAVMKGYEKYGAD-WKRIKDECPilVRRTNGDIKDKFR 356 8*******************.**********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.7E-7 | 308 | 361 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.4E-6 | 308 | 359 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0058 | 310 | 361 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.40E-10 | 312 | 360 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MALSQWKEAI LEGIFMEIEE GLVEEKNLER LENLVEILHK EGSRVPESVK ESYCQVAVEC 60 TARSLTDEND AKEAYAEAIR SIWLRRVMPL CDKVSCLVTR DLLNSCKKLW TAYGDEEACE 120 ALMDENTREK ALDSLRKVVS DLHPEIEYDY GERDGDVDDS EECSEETIDT EPMEEDEEGT 180 LSSDIDEERP CGVVEAESPP RRMKTISSAV VAEALEKLRG SKNDLMDALA EVGGPSNLNV 240 TSIVQHENDV ADPAGSVKLN LMERRTTAET YEWKDSIDDS DGETGYDGEV RGERNVVSPW 300 KRNQGGGRRT KIPWSTAETL AVMKGYEKYG ADWKRIKDEC PILVRRTNGD IKDKFRVEMR 360 RQEHHP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519534 | 2e-56 | AY519534.1 Arabidopsis thaliana MYB transcription factor (At1g06910) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018486401.1 | 0.0 | PREDICTED: uncharacterized protein LOC108856983 | ||||
TrEMBL | A0A397Y5N4 | 0.0 | A0A397Y5N4_BRACM; Uncharacterized protein | ||||
STRING | Bra031545.1-P | 0.0 | (Brassica rapa) | ||||
STRING | Bo8g114370.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14910 | 11 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06910.1 | 1e-141 | TRF-like 7 |