PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC4516_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 188aa MW: 21496.5 Da PI: 10.5019 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.7 | 4.2e-11 | 72 | 116 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W + E+++++++ ++ G+g+ k+I+r + k Rt+ q+ s+ qky RrC4516_p1 72 AWKESEHKRFLRGLQRVGKGDSKAISRNFVKSRTPTQVASHAQKY 116 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.88E-14 | 64 | 121 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.4E-16 | 68 | 119 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.4E-5 | 69 | 119 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.40E-5 | 72 | 117 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-6 | 72 | 116 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-6 | 72 | 116 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MLFGVRVVVD SMRKCVSLNN LSDYEKSSPE EEMQKTKPNR MPVTPPPSDD CIRLIRCLYW 60 LVDYCLDKTG VAWKESEHKR FLRGLQRVGK GDSKAISRNF VKSRTPTQVA SHAQKYFLRR 120 TNLNRRTNLK IFHINHSANP SFNLNRDAAP LSLNLSLSFN LNEPSNSRHS IMPSFSDGDS 180 NSNIIRVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013599652.1 | 1e-63 | PREDICTED: transcription factor MYB1R1-like isoform X1 | ||||
Swissprot | Q2V9B0 | 6e-27 | MY1R1_SOLTU; Transcription factor MYB1R1 | ||||
TrEMBL | A0A3N6RCQ8 | 5e-62 | A0A3N6RCQ8_BRACR; Uncharacterized protein | ||||
STRING | Bo8g102960.1 | 4e-62 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2461 | 26 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19000.2 | 4e-42 | MYB_related family protein |
Publications ? help Back to Top | |||
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