PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC4443_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Protein Properties

Length: 183aa MW: 20539.8 Da PI: 7.3228

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC4443_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	38.9	1.6e-12	85	144	27	97
---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 27 ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +++ kt +l++ +s ++W vk+ ++ + lt+GWk+F++ ++L+ gD+++F+++g++ f +v++f RrC4443_p1 85 DHI----KTAKLRTdPSAKTWLVKV--DGLK----LTDGWKDFADGHDLQIGDIIIFRHEGEMVF--HVTAF 144 333....35555544********..6666....*********************9998888..88776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01019	3.5E-8	29	147	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.16E-15	87	154	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	5.3E-8	88	141	IPR003340	B3 DNA binding domain
CDD	cd10017	1.54E-12	88	144	No hit	No description
Gene3D	G3DSA:2.40.330.10	2.4E-18	90	158	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.87	92	147	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MIGFSFSTKK WTNATKVVEK ESKELDTPTS TTKMDYNISD FLRHLSLEVF NNGRSISSRS 60 YQPTFLSASP SRLPHSPQHL QKSNDHIKTA KLRTDPSAKT WLVKVDGLKL TDGWKDFADG 120 HDLQIGDIII FRHEGEMVFH VTAFGPSCCD IQYTSASSHN INDDSYDQTT NNNGHIASGS 180 RMN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018489775.1	3e-71	PREDICTED: B3 domain-containing protein REM7-like
Swissprot	Q84WP3	2e-35	REM17_ARATH; B3 domain-containing protein REM17
TrEMBL	A0A397XYM3	2e-49	A0A397XYM3_BRACM; Uncharacterized protein (Fragment)
STRING	Bra024695.1-P	9e-50	(Brassica rapa)
STRING	Bra024697.1-P	2e-49	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM204	22	261

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26680.1	1e-37	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]