PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4399_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family LBD
Protein Properties Length: 219aa    MW: 24828.5 Da    PI: 4.9856
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4399_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26041.73.3e-1396841100
      DUF260  41 nvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                  ++k+l++l+ ++re+a+++lvyeA+ar++d v+G+v++i +l+++ + lk+e a+lke+
  RrC4399_p2   9 SITKILTDLDVDQREAAVTTLVYEAKARIDDAVQGCVRTIYELTHENQLLKQENAELKEQ 68 
                 699**************************************************9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508918.768169IPR004883Lateral organ boundaries, LOB
PfamPF031955.4E-12966IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MWPMQHEGSI TKILTDLDVD QREAAVTTLV YEAKARIDDA VQGCVRTIYE LTHENQLLKQ  60
ENAELKEQRA LMQQPLGLVQ QTQNPTAFLQ PAQVQRGGTS ISFATQPQQH NQTMMQWPVE  120
SQPQQHLETQ TQWGSQPHQT GISFATQPQQ HNQTLMQWPV ESQPQQNLHY TEPQHHSSMT  180
TTNCSATGNE LMHLTTQASG PLPPQSQMQE NRTSDEDLV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018456838.11e-134PREDICTED: LOB domain-containing protein 28-like
RefseqXP_018456839.11e-134PREDICTED: LOB domain-containing protein 28-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3771822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.19e-10ASYMMETRIC LEAVES 2-like 1