PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC435_p8
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Nin-like
Protein Properties Length: 592aa    MW: 66497 Da    PI: 7.4238
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC435_p8genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK31.14.5e-103723903452
     RWP-RK  34 riCRqyGIkRWPhRkiksl 52 
                riCRq+GI+RWP+Rkik++
  RrC435_p8 372 RICRQHGIARWPSRKIKKV 390
                89***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151910.239317410IPR003035RWP-RK domain
PfamPF020421.2E-7372390IPR003035RWP-RK domain
SuperFamilySSF542772.5E-18501588No hitNo description
Gene3DG3DSA:3.10.20.2401.1E-19503588No hitNo description
SMARTSM006661.6E-18506589IPR000270PB1 domain
PROSITE profilePS5174521.163506589IPR000270PB1 domain
CDDcd064078.66E-32507588No hitNo description
PfamPF005641.2E-16508588IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006107Biological Processoxaloacetate metabolic process
GO:0006108Biological Processmalate metabolic process
GO:0005515Molecular Functionprotein binding
GO:0050152Molecular Functionomega-amidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MLMQMEESIN SGMVDFPENF MDQQLLWEEE VSVWSSIGLK ERVTCAMGQL QEVMGGEKEF  60
LVQPWVPVER GRRRVVSTEK QPFSLNLFSQ SQSQSLAYRD ISAGYSFAAE VGSDELVGLP  120
GRVFLNRIPE WTPDVRFFRN EEYQVRASFA LPLCHALQAF DLRSSETSIV PTSLKPHTDD  180
LHREVASILK GICISYGLPL AITWEHQQGS CLSAIVSACY ASDQKSRSFL SACSEHHLLA  240
KEGIAGTAFA TKKQYFAKDV AILSYPLSHY AKMFDLHAAL AIPLLTRCSR RIVQFVLEFF  300
FPKDCLINQR LILDSLASQL IVRFQSSPHL MVDDQLAEEF TDTHTALTIE ESRCMSHKGK  360
GKHVSVSWSG ERICRQHGIA RWPSRKIKKV GHSLRKLKVV MDSVEGVQGS HHLASFYSSF  420
PQLQSSSSLP LPLLDPTKSV HNKSPHPSSS SSSGSSTCCS SEEKQLVGGC FHKPSQLQLS  480
SLRKDEQRAE RVTSSLPPLP SAKEDGIKVN AMFGESKMRM SLKHHWGVGD LRREIAKRFG  540
MDVTSNFRLK YMDDDDEWVL LTCDADLEEC IQIYKSSLYK ETAVRISVSS LL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrate. {ECO:0000269|PubMed:15375205}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479003.10.0PREDICTED: protein NLP3-like
SwissprotQ9SVF10.0NLP3_ARATH; Protein NLP3
TrEMBLA0A397ZEP80.0A0A397ZEP8_BRACM; Uncharacterized protein
STRINGBra033561.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152871718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38340.10.0Nin-like family protein
Publications ? help Back to Top
  1. Doidy J, et al.
    "Hit-and-Run" transcription: de novo transcription initiated by a transient bZIP1 "hit" persists after the "run".
    BMC Genomics, 2016. 17: p. 92
    [PMID:26843062]