PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4304_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 309aa    MW: 34572.3 Da    PI: 5.1474
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4304_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.2e-1979129155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s ++GVr++  +g+WvAeIr+p   + +  r +lg+f taeeAa a+++a+++++g
  RrC4304_p1  79 SSFRGVRQRV-WGKWVAEIREP---N-KvSRLWLGTFPTAEEAASAYDEAARAMYG 129
                 679*****99.**********8...2.47************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-2179138IPR016177DNA-binding domain
CDDcd000186.31E-3279139No hitNo description
PfamPF008471.3E-1280129IPR001471AP2/ERF domain
PROSITE profilePS5103221.9780137IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-3180138IPR001471AP2/ERF domain
SMARTSM003802.2E-3780143IPR001471AP2/ERF domain
PRINTSPR003675.9E-108192IPR001471AP2/ERF domain
PRINTSPR003675.9E-10103119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0010286Biological Processheat acclimation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MAVYNQTGTN TVSISRKRKS RARADGTTVA DRIKKWKEYN DFVNASSIKQ GEKPKRKAPA  60
KGSKKGCMKG KGGPENSRSS FRGVRQRVWG KWVAEIREPN KVSRLWLGTF PTAEEAASAY  120
DEAARAMYGP LARLNFPHQQ CVSSEFTSTS GQSEVCTVED TTVLGGDVCG KEEDADCKSR  180
PVISQVLDVK EGHDANTRLN EFDKDYWSRL SNGVEIPKEE EVIQPQQESD MLTVGDYGWL  240
SDMQNDQGFW NLDDSFDIDA LLGDMDVSQL TGHDPCQTQN QVQVHPEGYN SHPLQQEPLG  300
KHEFFDLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-17811441579Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11419SRKRKS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00346DAPTransfer from AT3G11020Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt and drought stresses. {ECO:0000269|PubMed:10809011, ECO:0000269|PubMed:9707537}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486927.10.0PREDICTED: dehydration-responsive element-binding protein 2B-like
SwissprotO821331e-101DRE2B_ARATH; Dehydration-responsive element-binding protein 2B
TrEMBLA0A397ZEF31e-158A0A397ZEF3_BRACM; Uncharacterized protein
STRINGBra029889.1-P1e-158(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28741765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11020.14e-86DRE/CRT-binding protein 2B
Publications ? help Back to Top
  1. Djafi N, et al.
    The Arabidopsis DREB2 genetic pathway is constitutively repressed by basal phosphoinositide-dependent phospholipase C coupled to diacylglycerol kinase.
    Front Plant Sci, 2013. 4: p. 307
    [PMID:23964284]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim K, et al.
    Alleviation of salt stress by enterobacter sp. EJ01 in tomato and Arabidopsis is accompanied by up-regulation of conserved salinity responsive factors in plants.
    Mol. Cells, 2014. 37(2): p. 109-17
    [PMID:24598995]
  4. Miyazaki Y,Abe H,Takase T,Kobayashi M,Kiyosue T
    Overexpression of LOV KELCH protein 2 confers dehydration tolerance and is associated with enhanced expression of dehydration-inducible genes in Arabidopsis thaliana.
    Plant Cell Rep., 2015. 34(5): p. 843-52
    [PMID:25627253]
  5. Lee SY,Boon NJ,Webb AA,Tanaka RJ
    Synergistic Activation of RD29A Via Integration of Salinity Stress and Abscisic Acid in Arabidopsis thaliana.
    Plant Cell Physiol., 2016. 57(10): p. 2147-2160
    [PMID:27497445]