PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC425_p5

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Nin-like

Protein Properties

Length: 432aa MW: 47832.1 Da PI: 4.6651

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC425_p5	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	76.3	3.7e-24	337	387	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + +++l+d+s++F+lpi++AA+ + +c+Tv+K+iCR+ G+ RWPhRkiksl RrC425_p5 337 TGKLKLKDISMHFHLPIQEAARRMSLCPTVVKKICRRGGLYRWPHRKIKSL 387 56899********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.677	327	407	IPR003035	RWP-RK domain
Pfam	PF02042	1.0E-20	340	387	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
MAGDDDPKSS GLEDKDDGDP YDERFSEEEL QNLMSNQNPN LMDFAFTENP LPPPPPHPVT 60 IATTDIIETG MLNQLSLTIR NSDDGTDDFL VTSFDDDIDL SWDLSDIPPE FLYDNVDSNT 120 LGEIGTNHDN GNNNGCCGTG RLEVSTRVFV ENGPNLEPGG GSSAAVAPIT PSVSNGILVC 180 TCCNLLRTLL HSNGQEMMRL DFHGGIGYFC HAILEIHRLD GSTEPQYQTI DLKFLSMEDV 240 KRFIEEYLAA RAACGFRVVQ DTNADFYQAM NTCFPDNPTP LSTLPPVDDV PMPQAIVPDP 300 ALNVPSVPLY VGLRDEPPVS KGKKRKQTAL AIQRERTGKL KLKDISMHFH LPIQEAARRM 360 SLCPTVVKKI CRRGGLYRWP HRKIKSLLRK ISSLKSMLET TKDAQAKARV QSEIEILEKQ 420 ISEICSEALK NA

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

MAGDDDPKSS GLEDKDDGDP YDERFSEEEL QNLMSNQNPN LMDFAFTENP LPPPPPHPVT  60
IATTDIIETG MLNQLSLTIR NSDDGTDDFL VTSFDDDIDL SWDLSDIPPE FLYDNVDSNT  120
LGEIGTNHDN GNNNGCCGTG RLEVSTRVFV ENGPNLEPGG GSSAAVAPIT PSVSNGILVC  180
TCCNLLRTLL HSNGQEMMRL DFHGGIGYFC HAILEIHRLD GSTEPQYQTI DLKFLSMEDV  240
KRFIEEYLAA RAACGFRVVQ DTNADFYQAM NTCFPDNPTP LSTLPPVDDV PMPQAIVPDP  300
ALNVPSVPLY VGLRDEPPVS KGKKRKQTAL AIQRERTGKL KLKDISMHFH LPIQEAARRM  360
SLCPTVVKKI CRRGGLYRWP HRKIKSLLRK ISSLKSMLET TKDAQAKARV QSEIEILEKQ  420
ISEICSEALK NA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018443294.1	0.0	PREDICTED: uncharacterized protein LOC108815138
TrEMBL	A0A3P6CLG3	0.0	A0A3P6CLG3_BRACM; Uncharacterized protein
STRING	Bra008646.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4076	23	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	6e-08	RWP-RK domain-containing protein