PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RrC415_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 233aa MW: 26127.1 Da PI: 4.7066 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.2 | 9.6e-19 | 61 | 111 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g RrC415_p1 61 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 111 68*****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.5E-13 | 61 | 111 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-32 | 62 | 120 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-21 | 62 | 120 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.0E-37 | 62 | 125 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.459 | 62 | 119 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-10 | 63 | 74 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.74E-33 | 63 | 121 | No hit | No description |
PRINTS | PR00367 | 2.3E-10 | 85 | 101 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 233 aa Download sequence Send to blast |
MVESVSTSTS IEEYDDSLHK ERVSQLHNPY SPSDLVSQDR RVEQTDNSKK TKRVKDSGKH 60 PVYRGVRMRN WGKWVSEIRE PRKKSRIWLG TFPTPEMAAR AHDVAALSIK GSSAILNFPE 120 LVESFPRPVS LSPRDIQTAA LKAAQMEPTT SSFASSSSDS SLESLVLVMD LTRTEAEELG 180 EIVELPSLGP SYDVNVGNEF VFSDSVDYCF YPPPWGELSE DSYGYNQVLS WDL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-19 | 60 | 119 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018468418.1 | 1e-169 | PREDICTED: dehydration-responsive element-binding protein 3 | ||||
Swissprot | Q9LYD3 | 1e-106 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | M4E3I0 | 1e-144 | M4E3I0_BRARP; Uncharacterized protein | ||||
STRING | Bra023332.1-P | 1e-145 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM185 | 28 | 283 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G11590.1 | 1e-107 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|