PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC411_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 723aa    MW: 75928.9 Da    PI: 10.2983
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC411_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.25e-10202231130
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIart 30 
                      r++W++eEd+ l+ av+++G g+W++I+++
        RrC411_p4 202 RKKWSAEEDQELIAAVNRHGEGSWALISKE 231
                      789************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.882197254IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-11198249IPR009057Homeodomain-like
SuperFamilySSF466899.33E-10198252IPR009057Homeodomain-like
SMARTSM007177.1E-6201252IPR001005SANT/Myb domain
PfamPF002491.6E-8202231IPR001005SANT/Myb domain
CDDcd116606.68E-9203246No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MVDSSSSNKK RKEFISEGDI ATLLQRYDTT TILKLLQEMA YYAELKMDWN ELVKKTSTGI  60
TSAREYQLLW RHLAYRDSLL PMDDDNAAPL LQHVQDDDSD MEFELEASPA VSVDAVSEAV  120
AHVKVIAASY VPIDSDIPED SICEAPLTIN IPYGLQRRPQ EPSDSYWSSR GMNITFPISL  180
QKAAEGHNGN ALASNMGPRK KRKKWSAEED QELIAAVNRH GEGSWALISK EEYEGEITVS  240
QLSQRWGSIR RRLDISNSST QSYQQRTEAA NRALSLAVGN RVPSKKVAVG IPPVLTSGSI  300
TGAQGNGANS GTSLQGQQQA KPVVQAIPRA ATSVQTAKAR VTARKPTSTL RAELMVTANS  360
VATAACMSGL GTAASVPKVE PGKNAAPAVP PKVKSSVASL PRPSGISSVM NVEPVKTASA  420
ASLPRPSGMS STLIAEPVKS AAAASFPRPL GTTSASKAEP VKTTSTAVLP RPSGVISAPK  480
ADLVKTGHAV SLPRPSGIIS SPKTAPVKTA SAASSPRPAS MLSAPKGEPV RSVSAAATAA  540
NTKTQVAGSS SSFNKPPHMA PFSKGPTVQN ISVPASFASS RLAPTQRANT ATVMPQNPSV  600
GVAVTTSSKP VGVQKEQTQA SRTSPLVTTT LRPNKTISTN SVISTGKPVA TQMDTPPSLM  660
SKKDQVLQTC TEKSSLAKPP EKQSNSTVSP SVVAELETKP KDEASKGKSP DVATVPGTEQ  720
KGL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199203KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018457352.10.0PREDICTED: mucin-17
TrEMBLA0A078HN060.0A0A078HN06_BRANA; BnaA09g14920D protein
TrEMBLA0A397XZV80.0A0A397XZV8_BRACM; Uncharacterized protein
STRINGBra027882.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58220.10.0MYB_related family protein