PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC3934_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | DBB | ||||||||
Protein Properties | Length: 318aa MW: 35479.4 Da PI: 6.7663 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 26 | 2e-08 | 3 | 34 | 4 | 35 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHk 35 +C+ ++++e++ fC+ ++ lC C ++ H+ RrC3934_p1 3 IRCDVCDKEEASVFCTADEASLCSGCDQQVHH 34 58****************************74 PP | |||||||
2 | zf-B_box | 32 | 2.5e-10 | 57 | 94 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 ++C+ ++ek++ lfC++++ lC+dC ++H+ H+ RrC3934_p1 57 SPICDICQEKKALLFCQQDRAILCNDCDASIHSAneHK 94 589*****************************657776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 11.035 | 1 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.4E-6 | 3 | 34 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.64E-8 | 3 | 47 | No hit | No description |
SMART | SM00336 | 3.6E-7 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.9E-13 | 55 | 102 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.983 | 55 | 102 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 5.8E-9 | 57 | 95 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.77E-12 | 58 | 102 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MKIRCDVCDK EEASVFCTAD EASLCSGCDQ QVHHANKLAS KHLRFSLLYP SSSNNYSPIC 60 DICQEKKALL FCQQDRAILC NDCDASIHSA NEHKKKHDRF LLTGVKLSAS SSVYKPTSES 120 SSSSSQDCSV PSRKPLSAPQ SNNSKIQPSS KIGGDSEVSQ WGSTSTISEY LIDTLPGWHV 180 EDFLDSSLPP FGFSKSGGDD GVLPYIEAED DSTKRNNYNT VSLPSENLGI WVPQIPQTLP 240 SSYTNQYFSQ ENKNNNIQFG KYNKETLPEV KTYAPIQNMK QQGQNKRWYD DGGFTVPQIT 300 TTFTHPPLHS NKKSKYFW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493536 | 1e-112 | AB493536.1 Arabidopsis thaliana At1g75540 mRNA for hypothetical protein, partial cds, clone: RAAt1g75540. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018442834.1 | 0.0 | PREDICTED: B-box zinc finger protein 21-like | ||||
Swissprot | Q9LQZ7 | 1e-175 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | M4CHR5 | 0.0 | M4CHR5_BRARP; Uncharacterized protein | ||||
STRING | Bra003748.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5400 | 27 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 1e-158 | salt tolerance homolog2 |