PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC3927_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

BES1

Protein Properties

Length: 310aa MW: 33653.6 Da PI: 9.1617

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC3927_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	217.9	2.3e-67	9	149	2	145
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslqsslks 100 +sgr+ptwkErEnnkrRERrRRai+akiy+GLR qGnyklpk++DnneVlkALc eAGw+vedDGttyrkgskp+ ++++ g+ ++ s++ss+q s++s RrC3927_p2 9 SSGRTPTWKERENNKRRERRRRAITAKIYSGLRGQGNYKLPKHCDNNEVLKALCLEAGWIVEDDGTTYRKGSKPP-ASDMLGTPTTFSTNSSIQPSPQS 106 89***********************************************************************.******************* PP DUF822 101 salaspvesysaspksssfpspssldsislasaasllpvlsvlsl 145 sa++sp++sy+ sp sssfpsps++d ++++ llp+l++ ++ RrC3927_p2 107 SAFPSPAPSYHGSPVSSSFPSPSRYDGNPSS--YLLLPFLHNIAS 149 **************************987..899999988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.4E-62	9	133	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MAGGGGGSSS GRTPTWKERE NNKRRERRRR AITAKIYSGL RGQGNYKLPK HCDNNEVLKA 60 LCLEAGWIVE DDGTTYRKGS KPPASDMLGT PTTFSTNSSI QPSPQSSAFP SPAPSYHGSP 120 VSSSFPSPSR YDGNPSSYLL LPFLHNIASS IPANLPPLRI SNSAPVTPPL SSPTSRGSKR 180 KLMTQQLPIS GLRHPLFAIS APSSPTRRAG HQTPPTIPEC DESEESSFED SGRWINFQST 240 APSSPTFNLV NQTSMVIDMK RSDWGISGMN MKGSEFEFEN GTVKPWEGEM IHEVGVEDLE 300 LTLGGTKTRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	1e-25	12	90	372	450	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	1e-25	12	90	372	450	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	1e-25	12	90	372	450	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	1e-25	12	90	372	450	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018458488.1	0.0	PREDICTED: BES1/BZR1 homolog protein 2
Swissprot	Q94A43	1e-176	BEH2_ARATH; BES1/BZR1 homolog protein 2
TrEMBL	V4LS33	1e-175	V4LS33_EUTSA; Uncharacterized protein
STRING	XP_006411962.1	1e-175	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11512	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36780.1	3e-85	BES1/BZR1 homolog 2