PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC3907_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 456aa MW: 51191.9 Da PI: 5.5916 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.3 | 9.1e-51 | 9 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lp+GfrF+Ptdeelv +yL++k++g++ e+ +vi+evdi+k+ePwdLp + v+++++ew fF++ d+ky++g+r nrat +gyWkatgkd++v+s + RrC3907_p2 9 LPVGFRFSPTDEELVRYYLRQKINGRDDEV-RVIREVDICKYEPWDLPdlSVVRTTDSEWLFFCPLDRKYPSGSRMNRATVAGYWKATGKDRKVKSGSV 106 79*************************999.99**************96447788999**************************************999 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + +g+k+tLvfy+grapkg++t W+mheyr+ RrC3907_p2 107 KIIGVKRTLVFYTGRAPKGTRTCWIMHEYRA 137 99***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-57 | 5 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.336 | 9 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-25 | 10 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002230 | Biological Process | positive regulation of defense response to virus by host | ||||
GO:0002237 | Biological Process | response to molecule of bacterial origin | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 456 aa Download sequence Send to blast |
MEVLSLESLP VGFRFSPTDE ELVRYYLRQK INGRDDEVRV IREVDICKYE PWDLPDLSVV 60 RTTDSEWLFF CPLDRKYPSG SRMNRATVAG YWKATGKDRK VKSGSVKIIG VKRTLVFYTG 120 RAPKGTRTCW IMHEYRATEK DLDGTRPGQS PFVVCKLFKK EDVVSEASPE CGVVEPAVSS 180 PTVVDEMRSE VELSEVSLAF PTKEEPKHSD VAESSLVVSG ECQSDISAPE VTTTELDHID 240 WSSYLEFESL DQAMFSPLHS QVQSELGSAF SGFGYGSNEP FRNQNDAHIQ TQYGSNDPDQ 300 YMFDLLDSTF QIPYELPEMK HLAQPMPEQI IYEPQSLVNT SNKINNDASD TGIKIRTRRA 360 QAPAEQFVMQ GSASRRLRLQ VNNNSPKPEA DSPQLQCIKK EVKDTTCGSF MRSKSRTELI 420 FKKVAALGSS YRGLLKAGVV AVVFAMSVCS LTGKFR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-45 | 4 | 161 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-45 | 4 | 161 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-45 | 4 | 161 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-45 | 4 | 161 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-44 | 4 | 161 | 15 | 169 | NAC domain-containing protein 19 |
3swm_B | 1e-44 | 4 | 161 | 15 | 169 | NAC domain-containing protein 19 |
3swm_C | 1e-44 | 4 | 161 | 15 | 169 | NAC domain-containing protein 19 |
3swm_D | 1e-44 | 4 | 161 | 15 | 169 | NAC domain-containing protein 19 |
3swp_A | 1e-44 | 4 | 161 | 15 | 169 | NAC domain-containing protein 19 |
3swp_B | 1e-44 | 4 | 161 | 15 | 169 | NAC domain-containing protein 19 |
3swp_C | 1e-44 | 4 | 161 | 15 | 169 | NAC domain-containing protein 19 |
3swp_D | 1e-44 | 4 | 161 | 15 | 169 | NAC domain-containing protein 19 |
4dul_A | 8e-45 | 4 | 161 | 12 | 166 | NAC domain-containing protein 19 |
4dul_B | 8e-45 | 4 | 161 | 12 | 166 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator essential for the anti-viral defense called virus basal resistance response pathway (PubMed:11041886, PubMed:15629774, PubMed:18785827, PubMed:24418554). Not involved in HRT-mediated hypersensitive response (HR) and resistance to TCV (PubMed:18785827). Binds DNA non specifically (PubMed:15629774). Activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). {ECO:0000250|UniProtKB:Q9SCK6, ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774, ECO:0000269|PubMed:18785827, ECO:0000269|PubMed:24418554}.; FUNCTION: (Microbial infection) Compromised function in defense response pathway when interacting with the invading viral capsid protein (CP) of turnip crinkle virus (TCV) due to abnormal subcellular localization. {ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by bacterial pathogens type III effector proteins (TTEs). {ECO:0000269|PubMed:16553893}.; INDUCTION: (Microbial infection) Accumulates 2 days post infection with turnip crinkle virus (TCV) (PubMed:24418554). {ECO:0000269|PubMed:24418554}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ420440 | 0.0 | KJ420440.1 Brassica napus NAC transcription factor 91-1 (NAC91-1.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018457292.1 | 0.0 | PREDICTED: NAC domain-containing protein 91-like | ||||
Swissprot | Q9LKG8 | 0.0 | NAC91_ARATH; NAC domain-containing protein 91 | ||||
TrEMBL | A0A397XR97 | 0.0 | A0A397XR97_BRACM; Uncharacterized protein | ||||
STRING | Bra036520.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2416 | 28 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24590.2 | 0.0 | TCV-interacting protein |
Publications ? help Back to Top | |||
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