PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC389_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 403aa    MW: 44179.5 Da    PI: 9.6366
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC389_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.87.5e-11344385748
                HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   7 errkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                  rk+kNRe+A rsR+RK+ ++ eLe ++++L +eN++L k+
  RrC389_p3 344 HWRKIKNRESAARSRARKQIQTMELEAEAEKLRKENQELLKK 385
                579**********************************98775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.6E-5337403IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.703340385IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.75E-8343386No hitNo description
CDDcd147073.21E-17344386No hitNo description
PfamPF001702.3E-7344385IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.9E-10345385No hitNo description
PROSITE patternPS000360346360IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MDNNCNFKTL GTGPPGTINR PPVSTPLSRQ GSLFSWTLDQ IQNNLGKDCG SMNMEELLMS  60
ICSAEGTQGG VIPTNGVNEG LQKQGSITLP RILSQKTVDE VWKYITEEEL TNNDGRSTNI  120
PQIQKQPTFG DITLEEFLTR AGAVGNNNSG GYIHDPSSIS GIPNTSLSVE FQQKPLVSNV  180
LDSINIVPGN RILGSYLHPN VNGSTSAYKP RQEQQQQHNP FQPQQPIMSN PHGYGYGTHV  240
AFTSGQVNGH GIRDSYMETG DQSHQDNKVT LVQSVAPVPG GAISGVDACP QITPFPVLDG  300
IPKINAGTSI VSPFLDTTTG RNSVRDRNRN NGIAAEKKFV EKTHWRKIKN RESAARSRAR  360
KQIQTMELEA EAEKLRKENQ ELLKKQGKGI TKKRLRRTKS NIQ
Functional Description ? help Back to Top
Source Description
UniProtCould participate in abscisic acid-regulated gene expression. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894130.0AC189413.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB061E18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482665.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 8
SwissprotQ9FMM71e-102AI5L8_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 8
TrEMBLA0A078GCF30.0A0A078GCF3_BRANA; BnaA06g37000D protein
STRINGBra033649.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156311417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42910.17e-95bZIP family protein