PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT5G42910.1

Common Name

BZIP15, MBD2.11

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bZIP

Protein Properties

Length: 370aa MW: 41032.9 Da PI: 9.8285

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT5G42910.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32	2.7e-10	294	344	4	54
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 +k+ rrk+kNRe+A rsR+RK+a++ e e + ++L++ ++L k+ el+k AT5G42910.1 294 DKKLRRKIKNRESAARSRARKQAQTMEVEVELENLKKDYEELLKQHVELRK 344 699************************************999887777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-6	291	355	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.7E-11	293	345	No hit	No description
PROSITE profile	PS50217	9.99	293	345	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.2E-8	294	344	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.38E-8	295	344	No hit	No description
CDD	cd14707	2.90E-18	295	349	No hit	No description
PROSITE pattern	PS00036	0	298	313	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MDSYWRLKNL VNDLPVSTSL SRQGSIYSWT VDQFQTSLGL DCGSMNMDEL VKHISSAEET 60 QEGSQRQGST TLPPTLSKQN VGEVWKSITE EKHTNNNGGV TNITHLQGQQ TLGEITLEEF 120 FIRAGARGGN TNGGSIHDSS SSISGNPHTS LGVQIQPKAM VSDFMNNMVP RSHDSYLHQN 180 VNGSMSTYQP QQSIMSMPNG YSYGKQIRFS NGSLGSGNQS LQDTKRSLVP SVATIPSEAI 240 TCSPVTPFPT LNGKQKINGE SSLLSPSPYI SNGSTSTRGG KINSEITAEK QFVDKKLRRK 300 IKNRESAARS RARKQAQTME VEVELENLKK DYEELLKQHV ELRKRQMEPG MISLHERPER 360 KLRRTKSDIK

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MDSYWRLKNL VNDLPVSTSL SRQGSIYSWT VDQFQTSLGL DCGSMNMDEL VKHISSAEET  60
QEGSQRQGST TLPPTLSKQN VGEVWKSITE EKHTNNNGGV TNITHLQGQQ TLGEITLEEF  120
FIRAGARGGN TNGGSIHDSS SSISGNPHTS LGVQIQPKAM VSDFMNNMVP RSHDSYLHQN  180
VNGSMSTYQP QQSIMSMPNG YSYGKQIRFS NGSLGSGNQS LQDTKRSLVP SVATIPSEAI  240
TCSPVTPFPT LNGKQKINGE SSLLSPSPYI SNGSTSTRGG KINSEITAEK QFVDKKLRRK  300
IKNRESAARS RARKQAQTME VEVELENLKK DYEELLKQHV ELRKRQMEPG MISLHERPER  360
KLRRTKSDIK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
At.6524	0.0	silique

Expression -- Microarray ? help Back to Top
Source	ID	E-value
Genevisible	249170_at	0.0
Expression Atlas	AT5G42910	-
AtGenExpress	AT5G42910	-
ATTED-II	AT5G42910	-

Functional Description ? help Back to Top
Source	Description
UniProt	Could participate in abscisic acid-regulated gene expression. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT5G42910.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT5G42910

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ419599	0.0	AJ419599.1 Arabidopsis thaliana mRNA for basic leucine zipper transcription factor (atbzip15 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_199105.1	0.0	Basic-leucine zipper (bZIP) transcription factor family protein
Swissprot	Q9FMM7	0.0	AI5L8_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 8
TrEMBL	A0A178UNE9	0.0	A0A178UNE9_ARATH; Uncharacterized protein
STRING	AT5G42910.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15631	14	17
Representative plant	OGRP3984	10	24

Link Out ? help Back to Top
Phytozome	AT5G42910.1
Entrez Gene	834303
iHOP	AT5G42910
wikigenes	AT5G42910

Publications ? help Back to Top
Choi H,Hong J,Ha J,Kang J,Kim SY ABFs, a family of ABA-responsive element binding factors. J. Biol. Chem., 2000. 275(3): p. 1723-30 [PMID:10636868] Finkelstein RR,Lynch TJ The Arabidopsis abscisic acid response gene ABI5 encodes a basic leucine zipper transcription factor. Plant Cell, 2000. 12(4): p. 599-609 [PMID:10760247] Riechmann JL,Ratcliffe OJ A genomic perspective on plant transcription factors. Curr. Opin. Plant Biol., 2000. 3(5): p. 423-34 [PMID:11019812] Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] Jakoby M, et al. bZIP transcription factors in Arabidopsis. Trends Plant Sci., 2002. 7(3): p. 106-11 [PMID:11906833] Bensmihen S, et al. The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis. Plant Cell, 2002. 14(6): p. 1391-403 [PMID:12084834] Brocard IM,Lynch TJ,Finkelstein RR Regulation and role of the Arabidopsis abscisic acid-insensitive 5 gene in abscisic acid, sugar, and stress response. Plant Physiol., 2002. 129(4): p. 1533-43 [PMID:12177466] Deppmann CD, et al. Dimerization specificity of all 67 B-ZIP motifs in Arabidopsis thaliana: a comparison to Homo sapiens B-ZIP motifs. Nucleic Acids Res., 2004. 32(11): p. 3435-45 [PMID:15226410] Fujita Y, et al. AREB1 Is a transcription activator of novel ABRE-dependent ABA signaling that enhances drought stress tolerance in Arabidopsis. Plant Cell, 2005. 17(12): p. 3470-88 [PMID:16284313] Deppmann CD,Alvania RS,Taparowsky EJ Cross-species annotation of basic leucine zipper factor interactions: Insight into the evolution of closed interaction networks. Mol. Biol. Evol., 2006. 23(8): p. 1480-92 [PMID:16731568]