PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3847_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 193aa    MW: 21244.7 Da    PI: 5.1509
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3847_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding346.8e-111281847
                     HTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 18 qlGggtWktIartmgkgRtlkqcksrwqky 47
                     ++G++ W+tIar ++ gRt++ +k++w++ 
       RrC3847_p1  1 KFGNK-WATIARLLN-GRTDNAVKNHWNST 28
                     68999.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001674.17E-6129No hitNo description
PROSITE profilePS5129418.314133IPR017930Myb domain
SuperFamilySSF466891.06E-9143IPR009057Homeodomain-like
PfamPF002499.0E-8128IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-12143IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
KFGNKWATIA RLLNGRTDNA VKNHWNSTLK RKWLDGNLTA EEEGRDPAKK RRSMSSESVV  60
PPPVVDTGLY MSPESPNSDS STVPAQVFKP MPEVSPEEEE DPATALSLSL SLPGGDVSQE  120
SSQSSLLVPR FESQMRINVE ERGEGRRGEF MRVVHEMVKA EVRSYMAEMQ RNNGGGFVGG  180
GGFYDSGITP KIE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12951KRKWLDGNLTAEEEGRDPAKKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018433458.11e-117PREDICTED: transcription factor MYB44
SwissprotQ9SN127e-60MYB77_ARATH; Transcription factor MYB77
TrEMBLA0A078H1F74e-89A0A078H1F7_BRANA; BnaAnng03830D protein
STRINGBo8g079430.11e-75(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135981527
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.17e-44myb domain protein 77
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]