PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3835_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 138aa    MW: 15293.1 Da    PI: 8.3519
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3835_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.4e-053759123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C+ C++ F++   L  H++ H
  RrC3835_p3 37 YECTFCKRGFTNAQALGGHMNIH 59
                99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.2E-53462IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.68E-73464No hitNo description
SMARTSM003550.00973759IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1363764IPR007087Zinc finger, C2H2
PROSITE patternPS0002803959IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MQNMECDRSS SSTSSETGAV LHHLTSSSVS TVTRRMYECT FCKRGFTNAQ ALGGHMNIHR  60
RDRLNKAAKQ QNDADLALSS ARRCFHVASS DRGGYEQVES VALRTTTNLS LRIGSMVTRR  120
ENVVVEGDEI DLELRLGL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895911e-166AC189591.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH013D23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455078.13e-97PREDICTED: transcriptional regulator TAC1-like
TrEMBLA0A078H7R31e-83A0A078H7R3_BRANA; BnaA09g16550D protein
TrEMBLA0A3N6RDV71e-83A0A3N6RDV7_BRACR; Uncharacterized protein
TrEMBLA0A3P6E4L71e-83A0A3P6E4L7_BRAOL; Uncharacterized protein
STRINGBo9g059250.12e-83(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91682435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.13e-57C2H2 family protein