PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC376_p8
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 351aa    MW: 38686.6 Da    PI: 8.3936
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC376_p8genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2156.9e-051032123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y C+ C+k F++  +L  Hir H
  RrC376_p8 10 YICKFCNKKFPSGKSLGGHIRIH 32
               89*******************99 PP
2zf-C2H210.70.00177087320
               ETTTTEEESSHHHHHHHH CS
    zf-C2H2  3 CpdCgksFsrksnLkrHi 20
               C  Cg+ F +  +L +H+
  RrC376_p8 70 CRECGEGFDSLKDLWSHM 87
               99***************9 PP
3zf-C2H211.10.0013301323123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++Cp+C ++F++   L  H r+H
  RrC376_p8 301 HECPICFRVFKSGPALGGHKRSH 323
                79***********9999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.8E-7234IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.04E-7534No hitNo description
PfamPF139124.5E-61028IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1151037IPR007087Zinc finger, C2H2
SMARTSM003550.00471032IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801232IPR007087Zinc finger, C2H2
SMARTSM00355136892IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806992IPR007087Zinc finger, C2H2
PROSITE profilePS501578.767301323IPR007087Zinc finger, C2H2
PfamPF139122.2E-8301323IPR007087Zinc finger, C2H2
SMARTSM003550.1301323IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280303323IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
METITTEKQY ICKFCNKKFP SGKSLGGHIR IHTSLHSNSN SGKKPKKKKN KKRSVEQREI  60
TALKQQQLCC RECGEGFDSL KDLWSHMDCC CHCEGEKLVM DTETTTSSGS TRKRSKKQFS  120
SESFSSSTSS ACEIDQEHRN TALSLMMLSM DPRGLTLVLN SLVAELSSVN NSDILETKLS  180
SGEQLKMIFN VAVDDQLRSA AAAAGGDNGA ILTDSYSSDS DYFMNGPKRS DSDISVDGCL  240
RNNGDDLEAK EGRSKHEIRN SKNVALPCNE SDSCADRNRK IHSKSLMVKK EVSAKENSKG  300
HECPICFRVF KSGPALGGHK RSHFIGNLEH RIKHKAAADM GIDLNLPAQD I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14351KPKKKKNKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934802e-38AB493480.1 Arabidopsis thaliana At1g26610 mRNA for hypothetical protein, partial cds, clone: RAAt1g26610.
GenBankCP0026842e-38CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankT1K72e-38AC013427.3 Sequence of BAC T1K7 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018460431.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A3P6BI261e-125A0A3P6BI26_BRAOL; Uncharacterized protein
STRINGBra016278.1-P1e-124(Brassica rapa)
STRINGBo3g137160.11e-123(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26590.17e-74C2H2-like zinc finger protein