PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC376_p10
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 436aa    MW: 48939.1 Da    PI: 9.0295
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC376_p10genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00071379401123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp+C ++F++   L  H r+H
  RrC376_p10 379 HECPICFRVFKSGQALGGHKRSH 401
                 79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.4E-4632IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.61E-7731No hitNo description
SMARTSM003550.28931IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.533936IPR007087Zinc finger, C2H2
PfamPF139122.4E-4932IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576671.61E-785112No hitNo description
SMARTSM003550.1190112IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.15990117IPR007087Zinc finger, C2H2
PROSITE patternPS00028091112IPR007087Zinc finger, C2H2
PfamPF139121.7E-491114IPR007087Zinc finger, C2H2
SMARTSM003550.14379401IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.974379401IPR007087Zinc finger, C2H2
PfamPF139123.3E-10379401IPR007087Zinc finger, C2H2
PROSITE patternPS000280381401IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MEQCQERKFV CRFCSKRFPC GKSLGGHIRT HMNQENSADS DEDELNKLRV DESGGQSSYG  60
LRENPKKNKR FGVQRGMMPL KHQQHQQQLL CCRECGKGFP SSKALCGHMA CHSEREKIVM  120
DSQSETEASS SPMRRRSKRA VKHQHHYKSD AFVVGGSITN HQYGSASSDD TGIEPEQEEM  180
ALSLMMLSRD LSFKKGHNMV VNHSLAESSD NYSVILETKS SSGEQLKKME EFCKKDKLGG  240
VDNGNVLYDS DNSDSGYFRN GPKKLDSDVS VDGILRNNGA VMGFNSSTTK EDKNMDRFKK  300
EWPGPGSGRS STKYDLRKTK RGFPCYGRKK LKYELTESVY DSGDQLSLET ESCADTIKIH  360
SKATMVKKAS GSKKKSKGHE CPICFRVFKS GQALGGHKRS HFLGNHEHRT LVIQQQHQVA  420
HEMHTLIDLN LPAPID
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894290.0AC189429.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB066M16, complete sequence.
GenBankHM5609660.0HM560966.1 Brassica rapa subsp. chinensis C2H2 zinc finger transcription factor (MF20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450056.10.0PREDICTED: uncharacterized protein LOC108821548
TrEMBLM4DIF30.0M4DIF3_BRARP; Uncharacterized protein
STRINGBra016280.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.10.0C2H2-like zinc finger protein