PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC375_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 500aa    MW: 54715.1 Da    PI: 5.5138
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC375_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.51.1e-08175195526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C+ f++ G C++Gd+C +aHg
  RrC375_p3 175 PCPEFRK-GSCSRGDSCEYAHG 195
                8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002042.47E-174155No hitNo description
SuperFamilySSF484031.41E-1610165IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.8E-1611165IPR020683Ankyrin repeat-containing domain
PfamPF127962.1E-1023126IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.82257135IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00395787IPR002110Ankyrin repeat
PROSITE profilePS5008810.07292127IPR002110Ankyrin repeat
SMARTSM002480.009992124IPR002110Ankyrin repeat
SMARTSM003562.5E-5170196IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4174197IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-6175195IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.619175197IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-4203233IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.249205229IPR000571Zinc finger, CCCH-type
SMARTSM0035613205228IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MGDDEQSHLK FTLLLESAAS NDLSGFKSLI EEEGLDTVDR SGLWYGRRLG TTKMGFEERT  60
PLMIAALFGS KEIVDYIIST GLADVNRSCG SDGATALHCA VSGLSANSLE VVTLLLNGSA  120
DPESRDSCGN KPVDLMFPCL SPVFNGRKKV LERLLNGSEN ARRRDPRKYH YSCVPCPEFR  180
KGSCSRGDSC EYAHGIFECW LHPAQYRTRL CKDETNCSRR VCFFAHRPDE LRPLYTSTGS  240
GVPSPRSSFS SCNDMGGPIS PLPPLSPNGG VLTTPPLSPN GVPSPIGSGK PWMNWPSVTP  300
PTLQLPRSRL KSALNAREIN FSEEIHQRLS SPGGRWNNNN TAASPPFSGN GMNRLGSGGI  360
SPVHSLSDIF GASSLSSSPV GANYQFSIAN QRSQSFIEQR SNALNQHYPS MNTTTCLDDW  420
GSLDGKLDWS VNGDELQELR NSTSFRLRAG AMESRETMEG GELEEPDVSW VEPLVKEPQE  480
TRVSPVWMEQ SYMETEQTVA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018457652.10.0PREDICTED: zinc finger CCCH domain-containing protein 66
RefseqXP_018457654.10.0PREDICTED: zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A078IQD70.0A0A078IQD7_BRANA; BnaA10g29460D protein
STRINGBra002632.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein