PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3748_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 294aa    MW: 32460.1 Da    PI: 8.5611
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3748_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.3e-06628123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++C+k F++  +L  Hir H
  RrC3748_p2  6 FVCKYCNKKFPSGKSLGGHIRIH 28
                89*******************99 PP
2zf-C2H210.90.00156482220
                EETTTTEEESSHHHHHHHH CS
     zf-C2H2  2 kCpdCgksFsrksnLkrHi 20
                +C  C+k+F ++  L +H+
  RrC3748_p2 64 QCRVCSKRFCSSKALANHM 82
                7*****************9 PP
3zf-C2H211.90.00068235257123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp+C k++++   L  H r+H
  RrC3748_p2 235 HVCPICFKVYKSGQALGGHKRSH 257
                 79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.5E-5429IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.8E-8428No hitNo description
PfamPF139121.5E-7626IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.032633IPR007087Zinc finger, C2H2
SMARTSM003550.0056628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SuperFamilySSF576673.8E-85885No hitNo description
PROSITE profilePS501578.66390IPR007087Zinc finger, C2H2
SMARTSM003550.126385IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
SuperFamilySSF576678.22E-5232260No hitNo description
PfamPF139129.0E-10234257IPR007087Zinc finger, C2H2
PROSITE profilePS501578.912235262IPR007087Zinc finger, C2H2
SMARTSM003550.39235257IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280237257IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MEKKEFVCKY CNKKFPSGKS LGGHIRIHSP RSSLDLTGKH NNNKKRLVDE REMTPPLKQQ  60
QQQQCRVCSK RFCSSKALAN HMDCHNYATT SSSGPPAMMI KRSKKQHSNS DESFSIVSSS  120
ETVQGAKDLM FLHLGRKDYN FAVDSPVPES SENTSELSSG ELLTKDKVPA VADDDNSDDG  180
SSDDDYFMNG PKKSVSVGGS LRNTGFNSFS YGDELRKSPA VKRASGANKT SRGRHVCPIC  240
FKVYKSGQAL GGHKRSHTNT TIANQEDRIK HKAAAADMQF DLNLPAEEDS DDEE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894292e-35AC189429.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB066M16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018461211.10.0PREDICTED: zinc finger protein ZAT1-like
RefseqXP_018487795.10.0PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A0D3CD236e-81A0A0D3CD23_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EGN96e-81A0A3P6EGN9_BRAOL; Uncharacterized protein
STRINGBo5g042740.11e-81(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2035156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26590.15e-38C2H2-like zinc finger protein