PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC3689_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

C3H

Protein Properties

Length: 365aa MW: 40320 Da PI: 7.8156

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC3689_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.4	3.9e-06	100	124	3	26
S---SGGGGTS.--TTTTT-SS-SS CS zf-CCCH 3 telCrffartG.tCkyGdrCkFaHg 26 e C+ f+ +G C++G+ C FaHg RrC3689_p1 100 GEVCPEFRNGGgDCSRGELCGFAHG 124 589*********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.19	97	125	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.5E-4	97	126	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	10.868	98	126	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3	134	157	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000932	Cellular Component	cytoplasmic mRNA processing body
GO:0010494	Cellular Component	cytoplasmic stress granule
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MDVEHNNSGH IGRPTVDILP RKLLSSATSP SSPCLGDKAQ RECCHDSDSD DPYAGDHFRM 60 YEFKIRRCTR SRSHDWTDCP FAHPGEKARR RDPRQYHYTG EVCPEFRNGG GDCSRGELCG 120 FAHGVFECWL HPSRYRTEAC KDGKHCKRKI CFFAHSPRQL RVLPPSENFV SGGGGSSVLS 180 NKNNRCCMFC SHSPTSTLLD FSRSPTSSPP LSPADKSAVF SRLTRRHSAV AHKQALHELI 240 NSLDSFSLKE ALSAAASSSC PVTLPVTMLS NHHHRLPPWL DVGDIDLQLQ RSSLQYALSP 300 SSAPSHLNGQ LPPPSFFSDE FTPRGGRLSD FTVAASAAAE SRDKNSFEVG HSVDLDLGWV 360 NDLLT

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MDVEHNNSGH IGRPTVDILP RKLLSSATSP SSPCLGDKAQ RECCHDSDSD DPYAGDHFRM  60
YEFKIRRCTR SRSHDWTDCP FAHPGEKARR RDPRQYHYTG EVCPEFRNGG GDCSRGELCG  120
FAHGVFECWL HPSRYRTEAC KDGKHCKRKI CFFAHSPRQL RVLPPSENFV SGGGGSSVLS  180
NKNNRCCMFC SHSPTSTLLD FSRSPTSSPP LSPADKSAVF SRLTRRHSAV AHKQALHELI  240
NSLDSFSLKE ALSAAASSSC PVTLPVTMLS NHHHRLPPWL DVGDIDLQLQ RSSLQYALSP  300
SSAPSHLNGQ LPPPSFFSDE FTPRGGRLSD FTVAASAAAE SRDKNSFEVG HSVDLDLGWV  360
NDLLT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018455754.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 61-like
Swissprot	Q9FKW2	1e-164	C3H61_ARATH; Zinc finger CCCH domain-containing protein 61
TrEMBL	A0A0D3E6F3	0.0	A0A0D3E6F3_BRAOL; Uncharacterized protein
TrEMBL	A0A3N6QGN2	0.0	A0A3N6QGN2_BRACR; Uncharacterized protein
STRING	Bo9g059770.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2987	27	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44260.1	1e-160	C3H family protein