PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3679_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family RAV
Protein Properties Length: 344aa    MW: 38412.1 Da    PI: 10.2024
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3679_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.81.1e-1264112155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s++kGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a+ +++g
  RrC3679_p3  64 SRFKGVVPQP-NGRWGAQIYEK-----QQRVWLGTFNQEDEAARAYDVAAHRFRG 112
                 689***9788.8*********4.....6**********99************998 PP
2B399.61.9e-31189293199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+ tpsdv+k++rlv+pk+ ae+h      g ++ +++ l +ed +g++W+++++y+++s++yvltkGW++Fv++++L++gD + Fk+++ ++++l+
  RrC3679_p3 189 FEKAVTPSDVGKLNRLVIPKHQAEKHfplpsaGDVSVRGTLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVREKRLCAGDLISFKRSNGQDQQLY 287
                 89******************************99999****************************************************9877999999 PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 +++ +k
  RrC3679_p3 288 IGWKSK 293
                 999776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.31E-2464122No hitNo description
SuperFamilySSF541715.43E-1764121IPR016177DNA-binding domain
PfamPF008475.3E-864112IPR001471AP2/ERF domain
SMARTSM003801.2E-2665126IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-2065120IPR001471AP2/ERF domain
PROSITE profilePS5103220.09965120IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.108.4E-38182294IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-30187294IPR015300DNA-binding pseudobarrel domain
CDDcd100171.48E-27188281No hitNo description
PfamPF023621.0E-27189293IPR003340B3 DNA binding domain
PROSITE profilePS5086313.62189294IPR003340B3 DNA binding domain
SMARTSM010199.0E-26189294IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MDAASSVDES STSTNSVHTP AKIPPAPARK SSSPASLYRM GSGSSVVLDS ENGVEAESRK  60
LPSSRFKGVV PQPNGRWGAQ IYEKQQRVWL GTFNQEDEAA RAYDVAAHRF RGRDAVTNFK  120
ADSTLVNGDE VDFLSAHSKS EIVDMLRKHT YKEELEQRKR NLHGKGNTEE TAFAAVRVPT  180
GFKTAETLFE KAVTPSDVGK LNRLVIPKHQ AEKHFPLPSA GDVSVRGTLL NFEDVNGKVW  240
RFRYSYWNSS QSYVLTKGWS RFVREKRLCA GDLISFKRSN GQDQQLYIGW KSKSGSDQDT  300
GRVVVRLFGV DITSFKSKND GVVKEETEML SLRSNKKQRL VTTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A6e-6818530010124DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00031PBMTransfer from AT3G25730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482500.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor ARF14-like
SwissprotQ9LS061e-178RAVL4_ARATH; AP2/ERF and B3 domain-containing transcription factor ARF14
TrEMBLA0A397ZAC80.0A0A397ZAC8_BRACM; Uncharacterized protein
STRINGBo2g138650.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-167related to ABI3/VP1 1