PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC36682_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 198aa    MW: 22700.8 Da    PI: 9.985
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC36682_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3474.7e-151751897
                 --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                 +p +f++++g++++   ++ l +e+grsW+++l    ++++ +l++GW++F++ang++eg   +Fkl+  +++++v++++
  RrC36682_p1  1 VPVSFVRSNGLSNTY-CKIDLLNETGRSWKLNL--VHHKSGSYLRRGWRSFCSANGINEGRY-TFKLVL-KSETPVIRLY 75
                 599******998655.59***************..66666678*****************96.999876.6666787765 PP
2B363.34e-2093184698
                  ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  +++++l+++ l+l+++f++++g+ k +  +++l++ +g +W + l+ + + +++v+++GW+ F++ ngLk++D + Fkl+g +++++v++++ 
  RrC36682_p1  93 ITPSSLRNDALYLSRRFVNSNGLMKGRCCEMILKNDNGGTWCLVLRRNETNETTVISRGWRCFCQTNGLKVRDPFRFKLVG-TGEQPVLQLCP 184
                  688999999************9999*9******************98888889***************************9.67778999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023623.9E-13175IPR003340B3 DNA binding domain
SMARTSM010199.6E-12178IPR003340B3 DNA binding domain
PROSITE profilePS5086313.14178IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-13172IPR015300DNA-binding pseudobarrel domain
CDDcd100175.52E-13175No hitNo description
SuperFamilySSF1019361.57E-11170IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.69E-1984188IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-1784184IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.56288185IPR003340B3 DNA binding domain
SMARTSM010191.1E-2389186IPR003340B3 DNA binding domain
CDDcd100171.39E-1693184No hitNo description
PfamPF023621.9E-1893185IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
VPVSFVRSNG LSNTYCKIDL LNETGRSWKL NLVHHKSGSY LRRGWRSFCS ANGINEGRYT  60
FKLVLKSETP VIRLYHSEHR HENDTHSYLV GSITPSSLRN DALYLSRRFV NSNGLMKGRC  120
CEMILKNDNG GTWCLVLRRN ETNETTVISR GWRCFCQTNG LKVRDPFRFK LVGTGEQPVL  180
QLCPAESNRN TRHVGYSE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450651.11e-126PREDICTED: B3 domain-containing protein REM17-like isoform X1
RefseqXP_018450652.11e-126PREDICTED: B3 domain-containing protein REM17-like isoform X1
RefseqXP_018450653.11e-126PREDICTED: B3 domain-containing protein REM17-like isoform X1
RefseqXP_018450654.11e-126PREDICTED: B3 domain-containing protein REM17-like isoform X2
RefseqXP_018450655.11e-126PREDICTED: B3 domain-containing protein REM17-like isoform X1
RefseqXP_018450656.11e-126PREDICTED: B3 domain-containing protein REM17-like isoform X1
RefseqXP_018450657.11e-126PREDICTED: B3 domain-containing protein REM17-like isoform X1
RefseqXP_018450659.11e-126PREDICTED: B3 domain-containing protein REM17-like isoform X2
SwissprotQ84WP34e-56REM17_ARATH; B3 domain-containing protein REM17
TrEMBLA0A078GD431e-114A0A078GD43_BRANA; BnaA08g12400D protein
STRINGBra010225.1-P1e-114(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.12e-58B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]