PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC35649_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NF-YC | ||||||||
Protein Properties | Length: 138aa MW: 15237.1 Da PI: 9.1677 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 39.6 | 1.1e-12 | 1 | 69 | 30 | 98 |
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++adedv +i+ +Pvl+sk+ elf+ +l r++ + e +t+ ++ +v+r ++fdfl ++v + RrC35649_p1 1 MQADEDVGKIALAVPVLVSKSLELFLQDLCDRTYEITLERGAKTVSSLHLKHCVERYNVFDFLREVVSK 69 899*************************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.2E-17 | 1 | 68 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.7E-13 | 1 | 54 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 1.19E-18 | 1 | 71 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MQADEDVGKI ALAVPVLVSK SLELFLQDLC DRTYEITLER GAKTVSSLHL KHCVERYNVF 60 DFLREVVSKV PDYGQAQGSG DVTMEDRSVS KRRKPISDEL NDSDEENKKS KTQEVGNAKP 120 GGRGSRGRGR GRGRGGRA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 7e-16 | 1 | 55 | 21 | 75 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 125 | 134 | RGRGRGRGRG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353067 | 1e-134 | AK353067.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-20-D23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018441086.1 | 9e-96 | PREDICTED: dr1-associated corepressor | ||||
TrEMBL | A0A078IKA5 | 1e-76 | A0A078IKA5_BRANA; BnaC01g38370D protein | ||||
TrEMBL | A0A0D3AE87 | 1e-76 | A0A0D3AE87_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6FYF8 | 1e-76 | A0A3P6FYF8_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g139230.1 | 2e-77 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3506 | 24 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 1e-77 | nuclear factor Y, subunit C11 |