PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC34378_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 232aa    MW: 26415 Da    PI: 10.2374
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC34378_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.51.9e-2121118199
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  f+++ ++++ l++g+l+++  f++e g+kk  s ++tl +++gr+W  +l+++++ g+  ++l+ GW+e++kang+k++D++v++l+  +++++v+k+
  RrC34378_p1  21 FLTIKLTPNRLQTGQLYISSVFINESGIKK--SGEITLLNQDGRKWPSYLQMTGQCGSewFYLRHGWREMCKANGVKVNDSFVLELIC-EDANPVLKF 115
                  6778889999*************9999885..459***************9966655556***************************9.9999***** PP

                  E-S CS
           B3  97 frk 99 
                  ++k
  RrC34378_p1 116 CSK 118
                  987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.6E-1917118IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-1819118IPR015300DNA-binding pseudobarrel domain
CDDcd100171.32E-1620117No hitNo description
PfamPF023625.7E-2221118IPR003340B3 DNA binding domain
SMARTSM010199.0E-2521119IPR003340B3 DNA binding domain
PROSITE profilePS5086312.81621119IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
EKRRLDECSK RKKKNNNPSK FLTIKLTPNR LQTGQLYISS VFINESGIKK SGEITLLNQD  60
GRKWPSYLQM TGQCGSEWFY LRHGWREMCK ANGVKVNDSF VLELICEDAN PVLKFCSKVD  120
NKGNGNRRPC KKRAHEEAPI VETEGRKRGR PRLSNRHATN SSHLRRTQQE SCSVADQVAN  180
VKLSILDTLN TVRQFRAELE AREKNLEATL LEVDSLGDRI LGISQSLTSN NV
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in flower development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018447207.11e-159PREDICTED: B3 domain-containing protein REM1-like
SwissprotO650988e-86REM1_BRAOB; B3 domain-containing protein REM1
TrEMBLA0A078JDF21e-121A0A078JDF2_BRANA; BnaA08g30700D protein
STRINGBra010228.1-P1e-120(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99501736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31610.12e-80B3 family protein
Publications ? help Back to Top
  1. Franco-Zorrilla JM, et al.
    Identification of genes specifically expressed in cauliflower reproductive meristems. Molecular characterization of BoREM1.
    Plant Mol. Biol., 1999. 39(3): p. 427-36
    [PMID:10092172]