PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3395_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 290aa    MW: 31839.8 Da    PI: 8.4415
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3395_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.00127897221
                EETTTTEEESSHHHHHHHHH CS
     zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                +C+ Cgk+F ++  L  H+r
  RrC3395_p4 78 PCTECGKTFWSWKALFGHMR 97
                5******************8 PP
2zf-C2H210.70.0017163185123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C+ C+k+F ++  L  H  +H
  RrC3395_p4 163 FECGGCKKVFGSHQALGGHRASH 185
                 89************999999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.80677104IPR007087Zinc finger, C2H2
PfamPF139124.7E-877101IPR007087Zinc finger, C2H2
SMARTSM003550.0117799IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.51E-77899No hitNo description
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.9E-47999IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.51E-7158185No hitNo description
PfamPF139121.2E-7162186IPR007087Zinc finger, C2H2
PROSITE profilePS501579.66163190IPR007087Zinc finger, C2H2
SMARTSM003553163185IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280165185IPR007087Zinc finger, C2H2
PfamPF139124.9E-11227252IPR007087Zinc finger, C2H2
SuperFamilySSF576672.23E-5227254No hitNo description
PROSITE profilePS501579.64228255IPR007087Zinc finger, C2H2
SMARTSM003550.11228250IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280230250IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MTTNNSDSDP NFHTPLTSTS NAIIPIYPNP NLQLALSPSY NQSPTKKRTR TVAFPSSSSP  60
KPKYPRKPDP NAPKITRPCT ECGKTFWSWK ALFGHMRCHP ERQWRGINPP PNHRGPTSAS  120
FSNQNQRLPN WVSLMTEEDH EVASCLLMLA NSTPSSSSCG ERFECGGCKK VFGSHQALGG  180
HRASHKNVKG CFAITNVADD PMSTVTATTT PSDHQDHQGK LVTYMGHHKC NICFRVFSSG  240
QALGGHMRCH WEKEEETMVG GAFDLNVLAP TQDLSTSDTS GCSLDLRLGL
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490300.10.0PREDICTED: zinc finger protein ZAT3-like
SwissprotO654991e-149ZAT3_ARATH; Zinc finger protein ZAT3
TrEMBLA0A0D3DHT41e-177A0A0D3DHT4_BRAOL; Uncharacterized protein
STRINGBo7g117320.11e-178(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46191836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-146C2H2-like zinc finger protein