PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3382_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 192aa    MW: 22078 Da    PI: 6.9769
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3382_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.61.2e-1291135347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++++ +++G g+Wk I+r++  +Rt  q+ s+ qk+
       RrC3382_p1  91 PWTAEEHGNFLKGLAMFGRGDWKNISRKLVMTRTSTQVASHAQKH 135
                      7*****************************99***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.97884140IPR017930Myb domain
SuperFamilySSF466895.1E-1586140IPR009057Homeodomain-like
SMARTSM007178.8E-888138IPR001005SANT/Myb domain
TIGRFAMsTIGR015576.8E-1489139IPR006447Myb domain, plants
CDDcd001673.64E-891136No hitNo description
Gene3DG3DSA:1.10.10.601.7E-891135IPR009057Homeodomain-like
PfamPF002494.5E-1091135IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MAWKQWGRNE DKLFELALVI TENDPNRFET MVTFLGMPLE VVKHYYAALV HDVELIESGR  60
YGTTDYQDYA DGLPSFETKH IEKDKKQRGI PWTAEEHGNF LKGLAMFGRG DWKNISRKLV  120
MTRTSTQVAS HAQKHFLRQK MENQAKKRSS IHDITLVVDN DDAAYAKDVT APRSDLEATM  180
GQAHFGQQMP QF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018488909.11e-132PREDICTED: transcription factor DIVARICATA-like
TrEMBLA0A0D3CLD98e-89A0A0D3CLD9_BRAOL; Uncharacterized protein
STRINGBo5g137250.11e-89(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17289711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09450.11e-56MYB_related family protein