PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC333_p4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | ERF | ||||||||
Protein Properties | Length: 321aa MW: 35636 Da PI: 5.3433 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.1 | 1.4e-20 | 149 | 198 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+g RrC333_p4 149 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDRAAFKLRG 198 59******9.**********955...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.80E-36 | 148 | 208 | No hit | No description |
SuperFamily | SSF54171 | 2.09E-23 | 149 | 207 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-32 | 149 | 207 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-39 | 149 | 212 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.565 | 149 | 206 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-11 | 150 | 161 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.4E-15 | 150 | 198 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-11 | 172 | 188 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009415 | Biological Process | response to water | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MADFFSSNHG GELMEALQPF YKSASTSASD SAFVSSNAAF ASTQNDPFSF SYYNSQPQNI 60 SPYSTTQSDY GSYPDIYPGS MTYPSSFDSE LQQQPDQNYQ PQFHYQNGST NTHQDNNYTL 120 HFDDPNNSDF LAQPYPVPSS GSVPKPTKLY RGVRQRHWGK WVAEIRLPRN RTRLWLGTFD 180 TAEEAALAYD RAAFKLRGDS ARLNFPALRH QTASSPSDFG EYYGPIQAAV DAKLEAILAE 240 PKNHPGKKET KSRKKAKATT PSSVEHSTPQ QQSGSGESDG SGSPASDMMA MEMCVETPVP 300 WNDNFMLGKC PYEIDWASIL S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 9e-22 | 148 | 206 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00182 | DAP | Transfer from AT1G36060 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018489446.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF055 | ||||
Swissprot | Q9SKW5 | 1e-143 | ERF55_ARATH; Ethylene-responsive transcription factor ERF055 | ||||
TrEMBL | A0A078IDT3 | 0.0 | A0A078IDT3_BRANA; BnaAnng09570D protein | ||||
TrEMBL | A0A397ZID8 | 0.0 | A0A397ZID8_BRACM; Uncharacterized protein | ||||
TrEMBL | M4FH03 | 0.0 | M4FH03_BRARP; Uncharacterized protein | ||||
STRING | Bra040381.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15124 | 15 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G36060.1 | 1e-112 | ERF family protein |
Publications ? help Back to Top | |||
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