PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3298_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 271aa    MW: 31269.1 Da    PI: 9.1154
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3298_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.63.4e-192067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd ll+d+v+++G g+W+++a+  g++R +k+c++rw +yl
       RrC3298_p1 20 KGPWTSEEDRLLIDYVRLHGEGRWNSVAKLAGLKRNGKSCRLRWVNYL 67
                     79********************************************97 PP
2Myb_DNA-binding52.61.1e-1673117147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
       RrC3298_p1  73 RGQITPHEETIILELHAKWGNR-WSTIARSLP-GRTDNEIKNYWRTH 117
                      7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.5651571IPR017930Myb domain
SuperFamilySSF466891.58E-3017114IPR009057Homeodomain-like
SMARTSM007172.0E-161969IPR001005SANT/Myb domain
PfamPF002491.0E-172067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-242174IPR009057Homeodomain-like
CDDcd001675.15E-122267No hitNo description
PROSITE profilePS5129419.68272122IPR017930Myb domain
SMARTSM007174.7E-1572120IPR001005SANT/Myb domain
PfamPF002495.0E-1473117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2475121IPR009057Homeodomain-like
CDDcd001671.58E-1077118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MSLWGVMGAE WGMVEQGWRK GPWTSEEDRL LIDYVRLHGE GRWNSVAKLA GLKRNGKSCR  60
LRWVNYLRPD LKRGQITPHE ETIILELHAK WGNRWSTIAR SLPGRTDNEI KNYWRTHFKK  120
KTKSPTNNAE KTKNRILKRQ QFQQLRQMEL QQEQQTLQFN QIDMKKIMSL LDDDNNNNSC  180
DNNFSSSSSG RSGEGGAFYV PHQITHSTIV SGYDPNGNGV FPVPIFEANV DEDYKVWDGL  240
WNLDLEGQGS FGDGACIPRK NCFQNVSIPF Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-262012227128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489869.11e-169PREDICTED: myb-related protein 305
TrEMBLA0A397YIB71e-158A0A397YIB7_BRACM; Uncharacterized protein
TrEMBLM4DEV71e-158M4DEV7_BRARP; Uncharacterized protein
STRINGBra015029.1-P1e-159(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31072766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.11e-125myb domain protein 305