PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3289_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 240aa    MW: 26871.4 Da    PI: 6.3556
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3289_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind81.41.3e-251573260
                  HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
  HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                  Fl+k+++++e+++++++isw+e+g+sfvv+++++fak++Lpk+Fkhsnf+SFvRQLn+Y
    RrC3289_p1 15 FLTKTFNLVEEPSINDVISWNEDGSSFVVWNPTDFAKDLLPKHFKHSNFSSFVRQLNTY 73
                  9*********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.1E-27674IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.4E-2411100IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.07E-231174IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.5E-131538IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.0E-211573IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-135365IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-136678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MMSNGESQRT ALTPFLTKTF NLVEEPSIND VISWNEDGSS FVVWNPTDFA KDLLPKHFKH  60
SNFSSFVRQL NTYVRDCLSS VLFCLFVLFF GLILVPVRRA VSPPHQQPEK AVVSPSSSSG  120
EDQTMSPCGG LSVELLEENE RLRSQNIQLN RDLTQMKSLY GNIFNLMSTY AGPSSSHETM  180
MNQRFVEVEE EASPRLFGVS IGLKRTRSEG ASQVKTAAIG GGETPWLRHY NLLANQRVCD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B6e-171373262Putative transcription factor
5d5x_B6e-171373262Putative transcription factor
5d5x_E6e-171373262Putative transcription factor
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018439791.11e-129PREDICTED: heat stress transcription factor B-2a-like
SwissprotQ9SCW47e-80HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A3P6ATF91e-102A0A3P6ATF9_BRACM; Uncharacterized protein
STRINGBra029291.1-P1e-102(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.19e-83heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]