PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3210_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 277aa    MW: 30294.4 Da    PI: 8.4213
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3210_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00088185207123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++C+  Fs+   L  H+r+H
  RrC3210_p3 185 HECSICKAEFSSGQALGGHMRRH 207
                 78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.9E-11110135IPR007087Zinc finger, C2H2
SuperFamilySSF576679.85E-10110133No hitNo description
PROSITE profilePS5015710.471111138IPR007087Zinc finger, C2H2
SMARTSM003550.086111133IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
SuperFamilySSF576679.85E-10180207No hitNo description
Gene3DG3DSA:3.30.160.605.2E-4182209IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.4E-12184209IPR007087Zinc finger, C2H2
PROSITE profilePS501579.328185212IPR007087Zinc finger, C2H2
SMARTSM003550.031185207IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280187207IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MTSVHEETRL VLLIKGKRTK RQRSASPHMN AEAMSSVCNE ERSLEAREEG ADEIKFLGAT  60
DEDQDMANCL MLLSKGHKSK GSGDHLSTQK IGFLNNKKPV APLELGLDSV YTCKTCDKSF  120
HSFQALGGHR TSHKKPKLGA IVLKCDEKKS AVSAVKTVEA ARVVGSFLSL QVTSSDGSKK  180
QEKTHECSIC KAEFSSGQAL GGHMRRHRGL TLNPNANSTI KTSTSSVHHQ ESIRENNFME  240
LDLNLPAPED EPKLVFASKD QILLFAAASN SLIDCHH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325220.0AC232522.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB073I16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475119.10.0PREDICTED: zinc finger protein ZAT5-like
RefseqXP_018475984.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A0D3AZK20.0A0A0D3AZK2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6ACN20.0A0A3P6ACN2_BRAOL; Uncharacterized protein
STRINGBo3g002370.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63472745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.11e-143C2H2 family protein