PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC3163_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | WRKY | ||||||||
Protein Properties | Length: 352aa MW: 39137.2 Da PI: 5.039 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.8 | 3.4e-31 | 176 | 234 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers+ dp+++++tY+geH+h+ RrC3163_p1 176 SDMWAWRKYGQKPIKGSPYPRNYYRCSSSkGCLARKQVERSNLDPNIFIVTYTGEHTHP 234 79*************************998****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.0E-31 | 162 | 236 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.32E-27 | 168 | 236 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 33.281 | 170 | 236 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.1E-39 | 175 | 235 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.0E-26 | 177 | 234 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007263 | Biological Process | nitric oxide mediated signal transduction | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MSEDWDLFAV VRSCSSSVST ATINDNSRGV DEIGADRKQQ DLPPLFQHIH GGGDISRESS 60 SCNELQDSCK PFLPVTTTWS SPLPLPPPPP VVSSSPNILM KQEQGLIESH QDQKPPLGVR 120 VFPPPKTISS SSSVFVFRGQ RDNLLQQQPQ TPLRSRKRKN QQKRTICHVT QENLSSDMWA 180 WRKYGQKPIK GSPYPRNYYR CSSSKGCLAR KQVERSNLDP NIFIVTYTGE HTHPRPTHRN 240 SLAGSTRNKS QPVNPPPKPD HPSGQTVSGV KEELHLSPTT PLKENDDVQG TNGEEEVNME 300 DEEIDEVEEE EDDDDDVDDL LIPNFAVRDR DDLFFAGNFP SWSAGSAGDG GG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 7e-20 | 177 | 237 | 18 | 80 | Disease resistance protein RRS1 |
5w3x_D | 7e-20 | 177 | 237 | 18 | 80 | Disease resistance protein RRS1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00561 | DAP | Transfer from AT5G52830 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC246573 | 0.0 | KC246573.1 Brassica napus WRKY transcription factor 27.1 (WRKY27.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018469798.1 | 0.0 | PREDICTED: probable WRKY transcription factor 27 | ||||
Swissprot | Q9FLX8 | 1e-133 | WRK27_ARATH; Probable WRKY transcription factor 27 | ||||
TrEMBL | C4N0W3 | 0.0 | C4N0W3_BRANA; WRKY transcription factor 27.1 (Fragment) | ||||
STRING | Bra022612.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9998 | 26 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52830.1 | 1e-128 | WRKY DNA-binding protein 27 |
Publications ? help Back to Top | |||
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