PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3134_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 386aa    MW: 43386.9 Da    PI: 7.8281
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3134_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.44e-30157214260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 +Dgy WrKYGqK+vk+se+prsY++Ct+++C +kk ve+++ d++++ei+Y+g Hnh+k
  RrC3134_p4 157 NDGYGWRKYGQKQVKKSENPRSYFKCTYPNCVSKKIVETAS-DGQITEIIYKGGHNHPK 214
                 8***************************************9.***************85 PP
2WRKY102.52.4e-32322378359
                 -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 Dg++WrKYGqK+vkg+++prsYY+Ct++gC v+k+versaed+++v +tYeg+Hnh+
  RrC3134_p4 322 DGFKWRKYGQKVVKGNTNPRSYYKCTYQGCGVRKQVERSAEDERAVLTTYEGRHNHD 378
                 9*******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.7E-25148215IPR003657WRKY domain
SuperFamilySSF1182904.58E-23153215IPR003657WRKY domain
SMARTSM007747.3E-30156214IPR003657WRKY domain
PROSITE profilePS5081120.461157215IPR003657WRKY domain
PfamPF031061.6E-22157213IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.4E-34305380IPR003657WRKY domain
SuperFamilySSF1182902.88E-28312380IPR003657WRKY domain
PROSITE profilePS5081133.947315380IPR003657WRKY domain
SMARTSM007742.8E-37320379IPR003657WRKY domain
PfamPF031062.4E-25322378IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MSSTSFTDLL ASSGVDSYKQ DEDFLRGFYP ERAGSGLPKF KTAQPPPLPI SQPSYGFSFS  60
ELLDSPLLPS SSHSLISPTT GAFPYQCFNG SGTNNHSDFP WQLQTQTQPP NASSALPETY  120
VVQDLQKKQE DPVPREFAAD RQVKAPSYTV VVSRNFNDGY GWRKYGQKQV KKSENPRSYF  180
KCTYPNCVSK KIVETASDGQ ITEIIYKGGH NHPKPEFTKR PSGSSSSSSF SANARRMFNA  240
SSVVSETHDQ SENSSISFDC SDLEQRSFKS EYGEIQEEEE QPEIKRLKRE GEDEGMYAQV  300
SRAVKEPRVV VQTISDVDVL IDGFKWRKYG QKVVKGNTNP RSYYKCTYQG CGVRKQVERS  360
AEDERAVLTT YEGRHNHDVP TSLRRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-31156380877Probable WRKY transcription factor 4
2lex_A1e-31156380877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Functions with WRKY33 as positive regulator of salt stress response and abscisic acid (ABA) signaling (PubMed:18839316). Plays a partial role in heat stress tolerance (PubMed:19125253). Functions with WRKY26 and WRKY33 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:19125253, ECO:0000269|PubMed:21336597}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00282DAPTransfer from AT2G30250Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress (PubMed:18839316). Induced by heat stress (PubMed:19125253). {ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:19125253}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018465503.10.0PREDICTED: probable WRKY transcription factor 25
SwissprotO229210.0WRK25_ARATH; Probable WRKY transcription factor 25
TrEMBLA0A3N6TRK20.0A0A3N6TRK2_BRACR; Uncharacterized protein
STRINGBra018325.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116031733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30250.10.0WRKY DNA-binding protein 25
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]