PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3019_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ARR-B
Protein Properties Length: 652aa    MW: 72250.4 Da    PI: 5.3622
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3019_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like92.82.9e-29206259155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 kpr++W++eLH++Fv+av+qL G +kA+Pk+il+ m+++gLt+e+v+SHLQkYRl
  RrC3019_p1 206 KPRVVWSQELHQKFVHAVQQL-GLDKAVPKKILDYMNIEGLTRENVASHLQKYRL 259
                 79*******************.********************************8 PP
2Response_reg70.76.1e-24231301109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+p+ ++ l+++l + +y +v+ + ++++ale+l+ek   +Dl++ D+emp+ dG++ll+   e  ++lp+i+++ah++ +++ + +  Ga 
    RrC3019_p1  23 VLAVDDNPTCLRKLEELLLRCKY-HVTKTMESKKALEMLREKSnmFDLVISDVEMPDTDGFKLLEIGLE--MDLPVIMLSAHSDYDTVMKGIIHGAC 116
                   799********************.***************999999******************985344..57************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l+Kp++ +el++
    RrC3019_p1 117 DYLVKPVSLKELRN 130
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363923.3E-1581651IPR017053Response regulator B-type, plant
SuperFamilySSF521725.83E-3120137IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.1E-3420140No hitNo description
SMARTSM004482.2E-2721132IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011039.55422136IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.3E-2123131IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.30E-2045135No hitNo description
PROSITE profilePS5129412.774203262IPR017930Myb domain
SuperFamilySSF466891.97E-20204263IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-29204263IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-25206259IPR006447Myb domain, plants
PfamPF002491.3E-9208258IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MENMESMSNE DGRTDQFPVG MRVLAVDDNP TCLRKLEELL LRCKYHVTKT MESKKALEML  60
REKSNMFDLV ISDVEMPDTD GFKLLEIGLE MDLPVIMLSA HSDYDTVMKG IIHGACDYLV  120
KPVSLKELRN IWQHVVKKNI GSYKKIIGGP SRHLLPSSES APSGSRKRKE NVQEDSGDNG  180
DDDSDREEED GDGSEQDGEE SSNRKKPRVV WSQELHQKFV HAVQQLGLDK AVPKKILDYM  240
NIEGLTRENV ASHLQKYRLY LKKLDEGQQQ NMSHDAFGNR DSSYYHMAQL EGGLRDYSST  300
RHLSTSSLLA RSSLSKFHPS VYSSLNLQGS NSSSGFIQQG HHQNSSSSAN PFGTYHSPLL  360
ARSQSPLEPL QFPRSKCSPY MGDFKGIGDR GIGSGFLDSR MTFGSSSSSL PSAASSNNLM  420
LQENFTHNLH GASDGNQSCL DGAALSNSAS LNTGVNGLSS FPSWQGNLRT TRFPSHSLPL  480
NHAFGQDQMT CGVTGLGDYN TSLVSADNHA GVMQCEPPFL GDFMHNMNNQ KWEEQNCAMM  540
NNNNSFGNVD YPLQAADNNM VFRDHNATRS KGLDDSSLMM SPVEDSATTL NSRECVGNLT  600
MMDPEMRSAK LENDLVDNHV FDDIMNEMLK QDENNGMVSV AARFGLDSFP PP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-22204264363ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00057PBMTransfer from AT5G58080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0240294e-44AB024029.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21L19.
GenBankCP0026884e-44CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468076.10.0PREDICTED: two-component response regulator ARR18
SwissprotQ9FGT70.0ARR18_ARATH; Two-component response regulator ARR18
TrEMBLA0A3P6D4E60.0A0A3P6D4E6_BRAOL; Uncharacterized protein
STRINGBo2g028820.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142821823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58080.10.0response regulator 18