PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3015_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 422aa    MW: 46222.2 Da    PI: 9.7151
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3015_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY986e-31158214360
                 -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 DgynWrKYGqK+vkgs++prsYY+Ct+++Cpvkkkvers   +++ ei+Y+geHnh+k
  RrC3015_p3 158 DGYNWRKYGQKQVKGSDCPRSYYKCTHPKCPVKKKVERSM-GGQASEIVYQGEHNHSK 214
                 9***************************************.***************85 PP
2WRKY102.91.8e-32342399259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dg++WrKYGqK+v g+ +prsYYrCtsa+C+++k+ver+++dp+++++tYeg+Hnh+
  RrC3015_p3 342 EDGFRWRKYGQKVVGGNAHPRSYYRCTSANCRARKHVERASDDPRAFITTYEGKHNHH 399
                 8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.4E-27155215IPR003657WRKY domain
SMARTSM007747.7E-32156214IPR003657WRKY domain
SuperFamilySSF1182901.03E-23157215IPR003657WRKY domain
PfamPF031067.6E-24158212IPR003657WRKY domain
PROSITE profilePS5081122.607158215IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.8E-32330399IPR003657WRKY domain
PROSITE profilePS5081131.766336401IPR003657WRKY domain
SuperFamilySSF1182905.75E-27337399IPR003657WRKY domain
SMARTSM007742.4E-38341400IPR003657WRKY domain
PfamPF031065.1E-26342399IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MEVKESERVV IAKPIASRPS CSSIRTFTDL LTDSVTVSPH ESVDVAAIRP KTMRFKQPAV  60
ASVSYPPVDG KDKGKSCDDS DSKSYVVYKP KAKLVSQATV SALATMLQGS RQQVWRQSEA  120
VSYGKSGSQG RSGPNLVPRV PSFNESETSS GGDRSSVDGY NWRKYGQKQV KGSDCPRSYY  180
KCTHPKCPVK KKVERSMGGQ ASEIVYQGEH NHSKPSCPLP RRASSSSSSG LQKPQRELAS  240
EGSIGQDPNS VYYHPLWSTQ SSDSSKSITE RMNEGCVITP FEFAVPRPAN STGGTSDSGC  300
RSSSQCDEGE LDDPSRSKRR KNEKQASQTG VSQSSGESDS LEDGFRWRKY GQKVVGGNAH  360
PRSYYRCTSA NCRARKHVER ASDDPRAFIT TYEGKHNHHL HLRPPTSPAL PFTSTQHSNQ  420
AI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-28158400978Probable WRKY transcription factor 4
2lex_A5e-28158400978Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development. {ECO:0000269|PubMed:12084832}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by salicylic acid or wounding. {ECO:0000269|PubMed:12084832}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0121680.0FJ012168.1 Brassica napus WRKY44 transcription factor (WRKY44) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018474899.10.0PREDICTED: WRKY transcription factor 44-like isoform X1
SwissprotQ9ZUU00.0WRK44_ARATH; WRKY transcription factor 44
TrEMBLC4N1L50.0C4N1L5_BRANA; WRKY44 transcription factor
STRINGBra023112.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83622740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.10.0WRKY family protein
Publications ? help Back to Top
  1. Kim K,Jiang K,Teng SL,Feldman LJ,Huang H
    Using biologically interrelated experiments to identify pathway genes in Arabidopsis.
    Bioinformatics, 2012. 28(6): p. 815-22
    [PMID:22271267]
  2. Simon M, et al.
    Tissue-specific profiling reveals transcriptome alterations in Arabidopsis mutants lacking morphological phenotypes.
    Plant Cell, 2013. 25(9): p. 3175-85
    [PMID:24014549]
  3. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]
  4. Verweij W, et al.
    Functionally Similar WRKY Proteins Regulate Vacuolar Acidification in Petunia and Hair Development in Arabidopsis.
    Plant Cell, 2016. 28(3): p. 786-803
    [PMID:26977085]
  5. Gonzalez A, et al.
    TTG2 controls the developmental regulation of seed coat tannins in Arabidopsis by regulating vacuolar transport steps in the proanthocyanidin pathway.
    Dev. Biol., 2016. 419(1): p. 54-63
    [PMID:27046632]
  6. Hassani-Pak K, et al.
    Developing integrated crop knowledge networks to advance candidate gene discovery.
    Appl Transl Genom, 2016. 11: p. 18-26
    [PMID:28018846]