PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC297_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

HSF

Protein Properties

Length: 143aa MW: 16765.6 Da PI: 10.8077

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC297_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	52.9	1e-16	15	113	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHH....HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX.XXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpk....yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks.Fkkgkkel 93 F k ly +++d++l++++sws++++sf+++d+ ef+++vLp+ + nf+ F+ L+ YgF +vk ++k+ + h++ F +gk el RrC297_p3 15 FYKGLYAVVDDPSLDSVVSWSKDKKSFIIWDPIEFQRRVLPTgrerRIRSLNFSMFMADLKFYGFIRVKGSNKH------RYHIGHPKyFVRGKPEL 105 8899**********************************86555589999*****************9987......55666766689999999 PP XXXXXXXX CS HSF_DNA-bind 94 lekikrkk 101 ++k++ ++ RrC297_p3 106 MKKMQEER 113 99988654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	3.26E-17	11	110	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	3.2E-12	11	112	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	4.0E-20	12	110	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	2.7E-18	15	111	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MHVPVTVTDN SLSSFYKGLY AVVDDPSLDS VVSWSKDKKS FIIWDPIEFQ RRVLPTGRER 60 RIRSLNFSMF MADLKFYGFI RVKGSNKHRY HIGHPKYFVR GKPELMKKMQ EERIQKFEQA 120 RAMRKKAKAR AMELADSLGH LAL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC241146	2e-95	AC241146.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH072P15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018487557.1	1e-88	PREDICTED: heat stress transcription factor A-4a-like
TrEMBL	A0A078FS23	1e-86	A0A078FS23_BRANA; BnaC03g44290D protein
TrEMBL	A0A3P6AKD9	1e-86	A0A3P6AKD9_BRAOL; Uncharacterized protein
STRING	Bra022949.1-P	2e-86	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18172	6	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18880.1	2e-08	heat shock transcription factor A4A