PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2961_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 491aa    MW: 54978 Da    PI: 5.7017
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2961_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.89.2e-14326372455
                 HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YIk+Lq
  RrC2961_p3 326 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYIKELQ 372
                 799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.9E-5049240IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474593.01E-18321381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.536322371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.49E-15325376No hitNo description
PfamPF000102.8E-11326372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-17326381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-17328377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MNTRDVVGWE EEDRSVASAV LGNLASDFLT ANSASNQNLF LVMGTDDSLN EKLSRLVDCP  60
NSESFSWSYA IFWQQTVSRS GHQVLAWGDG CCREPKEEEE STFCYNRNSL GLEEEEMRWQ  120
YMRKRVLQKL HRLFGGSDED NYALSLENVT ATEMFFLASM YFFFNHGEGG PGRCYASGRH  180
VWLSDAVNSG SDYCFRSFMV KRAGIRTVVM VPTDAGVLEL GSVWSLPENV ELVKSVQGLF  240
MRRVKPPPLV VVHKLFGQEL SSSHQVQENV SVVAVEDKNH KVKKTSCTET RPASLLAEKR  300
PVSVVEEKRP RKRGRKPANG REEALNHVEA ERQRREKLNQ RFYALRAVVP NISKMDKASL  360
LGDAISYIKE LQEKVKIIEA EGVGTETTEA EESREVVDIQ AGEEEVVVRV ISPLESHPAS  420
RIIQALRNSE VMESNLSLAE DTLFHTFVVK SNNNGSDPLT KEKLIAAAYP PTSLTQHLLP  480
PSSTSQVSGD L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-27320383265Transcription factor MYC2
5gnj_B6e-27320383265Transcription factor MYC2
5gnj_E6e-27320383265Transcription factor MYC2
5gnj_F6e-27320383265Transcription factor MYC2
5gnj_G6e-27320383265Transcription factor MYC2
5gnj_I6e-27320383265Transcription factor MYC2
5gnj_M6e-27320383265Transcription factor MYC2
5gnj_N6e-27320383265Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1307315KRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Regulates positively abscisic acid (ABA) response. Confers drought tolerance and sensitivity to ABA. {ECO:0000269|PubMed:17828375}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00101PBMTransfer from AT2G46510Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently by ABA and polyethylene glycol (PEG). {ECO:0000269|PubMed:17828375}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018439865.10.0PREDICTED: transcription factor ABA-INDUCIBLE bHLH-TYPE
SwissprotQ9ZPY80.0AIB_ARATH; Transcription factor ABA-INDUCIBLE bHLH-TYPE
TrEMBLA0A0D3BNS80.0A0A0D3BNS8_BRAOL; Uncharacterized protein
STRINGBo4g008180.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37582759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.11e-146ABA-inducible BHLH-type transcription factor
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Thatcher LF, et al.
    Characterization of a JAZ7 activation-tagged Arabidopsis mutant with increased susceptibility to the fungal pathogen Fusarium oxysporum.
    J. Exp. Bot., 2016. 67(8): p. 2367-86
    [PMID:26896849]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]