PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2925_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 270aa    MW: 29861.2 Da    PI: 5.833
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2925_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.9e-18140189255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 gy+GVr+++ +g+++AeIrdp+    r  r++lg+f tae+Aa+a+++a+  ++g
  RrC2925_p2 140 GYRGVRQRP-WGKFAAEIRDPK----RaVRVWLGTFETAEDAARAYDRAAVGFRG 189
                 8********.**********83....57*********************976665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.0E-36140203IPR001471AP2/ERF domain
PfamPF008473.9E-11140184IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-21140198IPR016177DNA-binding domain
PROSITE profilePS5103223.907140197IPR001471AP2/ERF domain
PRINTSPR003672.8E-11141152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-31141197IPR001471AP2/ERF domain
CDDcd000181.04E-20141197No hitNo description
PRINTSPR003672.8E-11163179IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MHYPYTRPGF IGASDTQTRT RYPYQEQLSP EQELSVIVSA LQHVISGESD TTPYLGFSSD  60
STVIMPRSGS DTCQVCRIDG CLGCDYFFAP NRRIEMRQQV VVVEEEYGVT SNSSGRESSL  120
TAAKKAEGGK IRKRKNKKNG YRGVRQRPWG KFAAEIRDPK RAVRVWLGTF ETAEDAARAY  180
DRAAVGFRGP RAKLNFPFVD YTSATSHVEN ESTSVSARAS ASVSGGDSVE AEQWCGGECD  240
MDEYLKMMMM MDFGSGDSSD SGNTIADMFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-25141198361ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018447124.11e-163PREDICTED: ethylene-responsive transcription factor ERF109-like
SwissprotQ9SZ063e-98EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A3N6SQ441e-156A0A3N6SQ44_BRACR; Uncharacterized protein
STRINGBo3g168910.11e-148(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54692449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.11e-76redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]