PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2916_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 228aa    MW: 25193.1 Da    PI: 4.61
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2916_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.8e-181868155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+A +a++ a+++++g
  RrC2916_p2 18 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAMRAHDVAALSIKG 68
                68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381239.7E-157210IPR017392AP2/ERF transcription factor ERF/PTI6
PfamPF008475.9E-121868IPR001471AP2/ERF domain
SMARTSM003801.5E-341982IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-311977IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-211976IPR016177DNA-binding domain
PROSITE profilePS5103222.7611976IPR001471AP2/ERF domain
CDDcd000184.32E-322078No hitNo description
PRINTSPR003675.8E-102031IPR001471AP2/ERF domain
PRINTSPR003675.8E-104258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MVDMSLGSDK EKKGSKQPVY RGVRMRSWGK WVSEIREPRK KSRIWLGTFP TAEMAMRAHD  60
VAALSIKGAS AILNFPELSD SLPRPASLSP RDVRAAATKA ALMDFGNSTA FRHARCESDT  120
SETASLGKRS ESETSETASF SSSSFSLTSV VDEESMVSDD LVKDSIVELP SLGTSLDESN  180
EFVFFDSLED LVFMPSRSLN GALDDFTYDN DSPLNSIFQE SFSWMHFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-191477973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895651e-125AC189565.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009C15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018480622.11e-142PREDICTED: ethylene-responsive transcription factor ERF043-like
SwissprotQ9M0802e-89ERF43_ARATH; Ethylene-responsive transcription factor ERF043
TrEMBLA0A0D3DHD81e-123A0A0D3DHD8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6ELM71e-123A0A3P6ELM7_BRAOL; Uncharacterized protein
STRINGBo7g115860.11e-124(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.13e-88ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]