PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2879_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 253aa    MW: 27764.5 Da    PI: 9.798
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2879_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.000196118123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ykC+ Cgk F++   L  H  +H
  RrC2879_p3  96 YKCSVCGKAFPSYQALGGHKASH 118
                 9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139128.9E-1495119IPR007087Zinc finger, C2H2
SuperFamilySSF576673.76E-995170No hitNo description
PROSITE profilePS5015711.80196123IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.9E-496118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.004396118IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
PfamPF139124.4E-13148172IPR007087Zinc finger, C2H2
PROSITE profilePS501579.078148170IPR007087Zinc finger, C2H2
SMARTSM003550.15148170IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280150170IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MALEAMNPPS FTVRKDDPMN DAVFMEPWLK RKRSKRQRSR SPSPSPSSSS PRSHRPKSES  60
QEDPTEEEYL ALCLLKLAKD KHSPPPPTQD STKHTYKCSV CGKAFPSYQA LGGHKASHRI  120
KPPANDSTAP STEKHPSSTT VPPSGKIHEC SICRKVFPTG QALGGHKRCH YEGNLGGSKS  180
ISQSGSVSST VSEERSNRVL IDLNLPALPE LSLHHHNTAV DDEILSPLTG KKPLLLTGRD  240
QVIIKKEDLS LRI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12835LKRKRSKR
23439KRQRSR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. Acts as a negative regulator of abscisic acid (ABA) signaling during seed germination. Probably involved in jasmonate (JA) early signaling response. May regulate the expression of the JA biosynthesis gene LOX3 and control the expression of TIFY10A/JAZ1, a key repressor in the JA signaling cascade. May act as a positive regulator of leaf senescence. Has been identified as a suppressor of the deficiency of yeast snf4 mutant to grow on non-fermentable carbon source. {ECO:0000269|PubMed:10929106, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:18216250, ECO:0000269|PubMed:20619483, ECO:0000269|PubMed:21852415, ECO:0000269|PubMed:22709441}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, salt, cold, dehydration and the monovalent and divalent cations Li(+), Na(+), K(+), Cs(+), Ca(2+) and Mg(2+). {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:20619483, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018433746.11e-126PREDICTED: zinc finger protein AZF2-like
SwissprotQ9SSW22e-90AZF2_ARATH; Zinc finger protein AZF2
TrEMBLA0A0D3AC981e-114A0A0D3AC98_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FHW41e-114A0A3P6FHW4_BRAOL; Uncharacterized protein
STRINGBo1g113530.11e-115(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102721829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.27e-71zinc-finger protein 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ortiz-Espín A, et al.
    Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions.
    J. Exp. Bot., 2017. 68(5): p. 1025-1038
    [PMID:28184497]