PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC28482_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 193aa    MW: 20888.4 Da    PI: 7.3055
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC28482_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA44.42.4e-14163192133
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
                  C++C + kTp+WR    g+ktLCnaCG+++++ 
  RrC28482_p1 163 CTHCASEKTPQWR---TGPKTLCNACGVRFKSG 192
                  *************...888************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.37E-9156190No hitNo description
PROSITE profilePS5011410.66157193IPR000679Zinc finger, GATA-type
SMARTSM004011.4E-4157193IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.8E-10161191IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.15E-9162193No hitNo description
PfamPF003204.2E-11163192IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MDVYGLSSPD MLPIDNLLDF SKDEIFSSSS STIVSSATSS AASSSENPFN FPSTASTSFY  60
TSPPLTDFPH DLCVPSDDAA HLEWLSRFVD DSFSDYPPNP LTMTVRPEMS FTGKPRSRRS  120
RALVPSVAGT WAPTPEAEIC PSVAKRKPTK KLEAAEGGGA RRCTHCASEK TPQWRTGPKT  180
LCNACGVRFK SGR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444168.11e-109PREDICTED: GATA transcription factor 4-like
SwissprotO497439e-83GATA4_ARATH; GATA transcription factor 4
TrEMBLA0A397YRL41e-97A0A397YRL4_BRACM; GATA transcription factor
TrEMBLM4CGT61e-97M4CGT6_BRARP; GATA transcription factor
STRINGBra003419.1-P2e-98(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32032666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.14e-83GATA transcription factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]