PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC2778_p5

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 153aa MW: 17814.7 Da PI: 10.368

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC2778_p5	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.4	8e-06	16	44	2	30
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 2 rrahnerErrRRdriNsafeeLrellPka 30 r++ n rE+ RR r+++ f L +++ + RrC2778_p5 16 REKRNLREKGRRMRMKDLFCLLSSHVSPT 44 8899*********************9874 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.258	14	64	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.81E-10	14	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-6	16	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MEREREIGEG SSLSLREKRN LREKGRRMRM KDLFCLLSSH VSPTRRQLPV PQLIDQSTSY 60 MIQLKEKVTY LKEKKKTLLG EVRCRSERSS SLLPKLSIHS RDSIIEMNLI ISDNVKRLAL 120 HELMRVFEEE GAQVMSANLQ NLNDRTAYTI IAQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018489352.1	1e-104	PREDICTED: uncharacterized protein LOC108859946
Swissprot	Q9XIJ1	6e-73	BH168_ARATH; Transcription factor bHLH168
TrEMBL	A0A078IY00	1e-83	A0A078IY00_BRANA; BnaC08g49810D protein
TrEMBL	A0A3P5YA04	1e-83	A0A3P5YA04_BRACM; Uncharacterized protein
STRING	Bo5g012080.1	1e-80	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2382	21	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10586.1	4e-65	bHLH family protein