PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2775_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 327aa    MW: 36327.8 Da    PI: 5.9641
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2775_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2544e-1774123254
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                  y+GVr ++ +g+++AeIrd + ng   r++lg+f+ aeeAa a+++a+ + +
  RrC2775_p1  74 SYRGVRKRP-WGKFAAEIRDSTRNG--VRVWLGTFDVAEEAALAYDQAAFATK 123
                 69*******.**********44465..*********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.37E-2873133No hitNo description
PfamPF008471.5E-1174121IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-2174134IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-2874133IPR001471AP2/ERF domain
SMARTSM003802.0E-3574138IPR001471AP2/ERF domain
PROSITE profilePS5103222.10274132IPR001471AP2/ERF domain
PRINTSPR003673.4E-107586IPR001471AP2/ERF domain
PRINTSPR003673.4E-1098114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MYSSSSSWSS SQESFLRNES SMLDQSFFCP SYNYSDDFFS FESPEMMIKE ETQNGDVSNS  60
EEEEKIGTVD EEKSYRGVRK RPWGKFAAEI RDSTRNGVRV WLGTFDVAEE AALAYDQAAF  120
ATKGSLAVLN FPVEVVRESL KKMENVNLQD GGSPIMALKR KHSLRNRPRG KKRSTNSSSC  180
SSNSSSNSSS YSTSWSSSST SRSKKQSVVK QEDGTLVVFE DLEQNQEKSI TSYKLTTGLE  240
NLACGIKAIG IDSATILDSL PFHNLSDYCS SHNITTPVHT SPEHTLSNHF TPDHTSPVHL  300
TSDHKAAEQL TPNHDLPDHN SPKPQQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2873135163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00286DAPTransfer from AT2G31230Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894330.0AC189433.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB068H20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018474697.11e-118PREDICTED: ethylene-responsive transcription factor 15-like
SwissprotQ8VYM01e-109ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBLA0A078K1151e-113A0A078K115_BRANA; BnaAnng40920D protein
TrEMBLA0A3P6A4961e-113A0A3P6A496_BRACM; Uncharacterized protein
STRINGBo3g025110.11e-112(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39901859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.18e-96ethylene-responsive element binding factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang H, et al.
    Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea.
    Front Plant Sci, 2015. 6: p. 686
    [PMID:26388886]