PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC2757_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NF-YA

Protein Properties

Length: 1254aa MW: 138367 Da PI: 5.8715

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC2757_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	32	4e-10	1197	1220	35	58
CBFB_NFYA 35 rkpylheSRhkhAlrRpRgsgGrF 58 + py heSRh hA +R+R+sgGrF RrC2757_p1 1197 QPPYFHESRHLHAFKRARSSGGRF 1220 669********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14438	2.4E-25	50	131	IPR025852	Ataxin 2, SM domain
Gene3D	G3DSA:2.30.30.100	5.7E-4	60	97	No hit	No description
Pfam	PF14438	8.9E-20	401	484	IPR025852	Ataxin 2, SM domain
Gene3D	G3DSA:2.30.30.100	1.4E-4	409	446	No hit	No description
SMART	SM01272	2.1E-25	558	629	IPR009604	LsmAD domain
Pfam	PF06741	2.9E-20	558	628	IPR009604	LsmAD domain
Pfam	PF14438	2.4E-25	801	882	IPR025852	Ataxin 2, SM domain
Gene3D	G3DSA:2.30.30.100	5.0E-4	811	849	No hit	No description
SMART	SM00521	1.9E-5	1162	1223	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	13.884	1163	1223	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.5E-7	1197	1220	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1254 aa Download sequence Send to blast
MVFSDCIFPL DSNHGFNGLF KQFEAAMDTL PDPQSKSSSN VSPHRRETSR DSLVYLTTCM 60 IGHLVEVHLK NGSVYSGIFH AADVEKDFGI VLKMASLIKD SRQRSRSDFF RKPPFKTFIV 120 PADELVQVVA ENLSVSSDGT LNTVQTEKPV DLFTDSSISK SRRVDQDREA GRAVDVFDDS 180 GFNEEDDKFL DTCNDQTFGG SSTSSFQKPA SYSGKGYEDV VGDSQSSQNN TNVDQRCSDD 240 ARHIPSEQRS KDSSISESQL GERRKNKNPE VSHSSRSAEA SVSGHGDIKE SAKFSGSGTS 300 ASKIVAERER QGSEVSGKTK SESSFRQSDS RSSESHPAPS TPSRPRLPTS SSIGSLSSSE 360 KPTLNPDAKF KQFEATMNTL PDPQSKSSSN VSPHRKEKSC DSLVAFTSCM IGHHVEVHLN 420 DGSVYSGIFL AADMEKNFGI VLKNAFLIKE STLREHKSRS EFSRKPPFKT LIILADELVQ 480 VLAKNLSVSS DGMLNAVQSE KPMELLTDSS ISKSRHVNQG RELIPWEPDG NVPPGLDNVF 540 DDTSKRQWNQ FEANELLFGV KSTFDEKQYT TTLPRSTQTR ELEEKAQKIA TESEDEIIRH 600 VHVAEERGLQ LSEKSDIDEE TKYSAVRRVD KFDDGGFNEE DDKLLDTCND KNFGGSSTSS 660 VQKSTSSSGK GYKDVPDVPG QTQPSRNNTN VDQSCSISGD DAQNFPSEQR SKDFPAPSSS 720 ISESQLGERR KNNSPEVSHS SRSAGESVSG HGDIKEDAEL GVGETSTSKI FKQFEAAMDT 780 LPAPQSKSSS NGYPRRREKS RDSLVYLTTC MIGHLVEVHL KNGSVYSGIF HAADVEKDFG 840 IVLKMASLIK DSRQRSRSDF FRKPPFKTFI VPADELVQVV AEDLSVSSDV TLNTVQSEKP 900 VELLTDSSSV QKPAFSSGKG YENIRGDGQP SRNNTNVDQS CSISGDDARQ IPSEQRSKDF 960 PAPGSSISER QLDERRKDTN LESAEESVSG HGDIKEGAKI VGGGTSASKT VTERERQGSQ 1020 VSGKTKSEIS FGQSDSRSLE SRPAPSTPSR PELPPSSSIG SLSSSEKFTF DPNAKEFEPS 1080 QPPVAVQAQS PTEYTSFYCP AEPVQQMPVQ AQSPMADGSF YYPAAPFQQM PGGYGIQPQY 1140 FEQPMFYDQY YGQQYGQTGY PQYAQAQYSQ QQQQPMMMPP RPQMMMGQPP RPPPPHQPPY 1200 FHESRHLHAF KRARSSGGRF LNTKKLQESN SPNSHLFKNP QRKWLENILF GLNW

Sequence ? help Back to Top

Protein Sequence Length: 1254 aa Download sequence Send to blast

MVFSDCIFPL DSNHGFNGLF KQFEAAMDTL PDPQSKSSSN VSPHRRETSR DSLVYLTTCM  60
IGHLVEVHLK NGSVYSGIFH AADVEKDFGI VLKMASLIKD SRQRSRSDFF RKPPFKTFIV  120
PADELVQVVA ENLSVSSDGT LNTVQTEKPV DLFTDSSISK SRRVDQDREA GRAVDVFDDS  180
GFNEEDDKFL DTCNDQTFGG SSTSSFQKPA SYSGKGYEDV VGDSQSSQNN TNVDQRCSDD  240
ARHIPSEQRS KDSSISESQL GERRKNKNPE VSHSSRSAEA SVSGHGDIKE SAKFSGSGTS  300
ASKIVAERER QGSEVSGKTK SESSFRQSDS RSSESHPAPS TPSRPRLPTS SSIGSLSSSE  360
KPTLNPDAKF KQFEATMNTL PDPQSKSSSN VSPHRKEKSC DSLVAFTSCM IGHHVEVHLN  420
DGSVYSGIFL AADMEKNFGI VLKNAFLIKE STLREHKSRS EFSRKPPFKT LIILADELVQ  480
VLAKNLSVSS DGMLNAVQSE KPMELLTDSS ISKSRHVNQG RELIPWEPDG NVPPGLDNVF  540
DDTSKRQWNQ FEANELLFGV KSTFDEKQYT TTLPRSTQTR ELEEKAQKIA TESEDEIIRH  600
VHVAEERGLQ LSEKSDIDEE TKYSAVRRVD KFDDGGFNEE DDKLLDTCND KNFGGSSTSS  660
VQKSTSSSGK GYKDVPDVPG QTQPSRNNTN VDQSCSISGD DAQNFPSEQR SKDFPAPSSS  720
ISESQLGERR KNNSPEVSHS SRSAGESVSG HGDIKEDAEL GVGETSTSKI FKQFEAAMDT  780
LPAPQSKSSS NGYPRRREKS RDSLVYLTTC MIGHLVEVHL KNGSVYSGIF HAADVEKDFG  840
IVLKMASLIK DSRQRSRSDF FRKPPFKTFI VPADELVQVV AEDLSVSSDV TLNTVQSEKP  900
VELLTDSSSV QKPAFSSGKG YENIRGDGQP SRNNTNVDQS CSISGDDARQ IPSEQRSKDF  960
PAPGSSISER QLDERRKDTN LESAEESVSG HGDIKEGAKI VGGGTSASKT VTERERQGSQ  1020
VSGKTKSEIS FGQSDSRSLE SRPAPSTPSR PELPPSSSIG SLSSSEKFTF DPNAKEFEPS  1080
QPPVAVQAQS PTEYTSFYCP AEPVQQMPVQ AQSPMADGSF YYPAAPFQQM PGGYGIQPQY  1140
FEQPMFYDQY YGQQYGQTGY PQYAQAQYSQ QQQQPMMMPP RPQMMMGQPP RPPPPHQPPY  1200
FHESRHLHAF KRARSSGGRF LNTKKLQESN SPNSHLFKNP QRKWLENILF GLNW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018492507.1	0.0	PREDICTED: uncharacterized protein LOC108862772
Swissprot	Q94AM9	1e-141	CID4_ARATH; Polyadenylate-binding protein-interacting protein 4
TrEMBL	A0A3P5ZV36	0.0	A0A3P5ZV36_BRACM; Uncharacterized protein
STRING	Bo3g065870.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM37614	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54160.1	4e-11	nuclear factor Y, subunit A5