PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC27312_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Dof

Protein Properties

Length: 150aa MW: 17084 Da PI: 8.4778

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC27312_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.7	1.4e-39	18	78	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprCds ntkfCyynny+lsqPr++Ck+CrryWtkGG+lrn+PvGgg+rkn k+s RrC27312_p1 18 EQEQLKCPRCDSPNTKFCYYNNYNLSQPRHYCKNCRRYWTKGGSLRNIPVGGGSRKNTKRS 78 5789*****************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	9.2E-33	20	76	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.031	22	76	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-21	23	67	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	24	60	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
MLMMAAKQQQ QQQPELPEQE QLKCPRCDSP NTKFCYYNNY NLSQPRHYCK NCRRYWTKGG 60 SLRNIPVGGG SRKNTKRSSS STSSNNLEDK TVAVVPDQKP SSEEESRPKL VEEERKMTGN 120 GSDPDVIRVT CWRSEIQSAA GFGCREDGWD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018487206.1	1e-69	PREDICTED: dof zinc finger protein DOF1.7
Swissprot	O82155	1e-51	DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBL	A0A078I475	1e-56	A0A078I475_BRANA; BnaA05g15330D protein
TrEMBL	E2IP94	1e-56	E2IP94_BRACM; Dof type zinc finger protein
STRING	Bra030423.1-P	1e-56	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1269	28	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	5e-33	DOF zinc finger protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]