PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2679_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 539aa    MW: 62606 Da    PI: 6.1538
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2679_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.26.3e-34281192102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k++ei+ed+++++++sw++ g sfvv+d ++f++ +Lp++Fkhsnf+SF+RQLn+YgF+k++ e+         weF+++ F  g+++ll++ik
    RrC2679_p2  28 FLIKTFEIVEDPNTDHIVSWNRGGASFVVWDLHSFSEFLLPRHFKHSNFSSFIRQLNTYGFRKIEAEK---------WEFANEGFLSGQRHLLKNIK 115
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r++s
    RrC2679_p2 116 RRAS 119
                   *986 PP
2HSF_DNA-bind107.11.3e-333003912102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k++ei+ed+++++++sw++ g+sfvv+d ++f++ +Lp++Fkhsnf+SF+RQLn+YgF+k++ e+         weF+++ F  g+++ll++ik
    RrC2679_p2 300 FLNKTFEIVEDPNTDHIVSWNRGGTSFVVWDLHSFSEFLLPRHFKHSNFSSFIRQLNTYGFRKIEAER---------WEFANEGFLLGQRHLLKTIK 387
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r++s
    RrC2679_p2 388 RRAS 391
                   *976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.02E-3224117IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.8E-3524117IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.3E-5424117IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.1E-2928117IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406791IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.4E-35296389IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.3E-54296389IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.31E-32296389IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.9E-18300323IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.4E-29300389IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-18338350IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340339363IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-18351363IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MNPFLNQEDD PPPPKPVEGL HEIGPPPFLI KTFEIVEDPN TDHIVSWNRG GASFVVWDLH  60
SFSEFLLPRH FKHSNFSSFI RQLNTYGFRK IEAEKWEFAN EGFLSGQRHL LKNIKRRASL  120
ASTSSSIQDP CTELRKEKQL LLMELVSLRQ QQQTTKSYIK AMEQRIEGAE EKQRKMMSFL  180
ARAMQNPSFL HQLLKQRDMR VKELEVEAAE RGRGSSVSEL EALALEMQGY GRQRNVKEEE  240
DMVVERELDD GFWEELLSNT KKFFLFSFNL MNPFLHPEGD PPQSPPKPIE GLHEIGPPPF  300
LNKTFEIVED PNTDHIVSWN RGGTSFVVWD LHSFSEFLLP RHFKHSNFSS FIRQLNTYGF  360
RKIEAERWEF ANEGFLLGQR HLLKTIKRRA SFASTSSSPI HDPCVELLKE KQLLLTEVEI  420
LRQQQQTARS YIKAMKQRIE GAEKRQREMM SFLARVVQSP SLYQFLKQRD TRVKDLEAEE  480
EERGRGSSVS ELEALALEMQ GYGKQRKVKE EEDVVVEREL DDGFWEELLG NESLASTSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-222639418125Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1382388LKTIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481125.10.0PREDICTED: heat stress transcription factor A-7a-like
RefseqXP_018481492.10.0PREDICTED: heat stress transcription factor A-7a-like
SwissprotQ9SV121e-136HFA7A_ARATH; Heat stress transcription factor A-7a
TrEMBLA0A3P6F2C21e-169A0A3P6F2C2_BRAOL; Uncharacterized protein
STRINGBo7g101320.11e-170(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51910.11e-138heat shock transcription factor A7A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]
  3. Nie S,Yue H,Xing D
    A Potential Role for Mitochondrial Produced Reactive Oxygen Species in Salicylic Acid-Mediated Plant Acquired Thermotolerance.
    Plant Physiol., 2016.
    [PMID:26099269]